View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0837_high_19 (Length: 228)
Name: NF0837_high_19
Description: NF0837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0837_high_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 52874552 - 52874330
Alignment:
| Q |
6 |
agataattcattatagcgttcatcaagctgatcacgagcagttaagtctgaccataacgaagcacatataactgttccgacagacatcaaccacaaacat |
105 |
Q |
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| T |
52874552 |
agataattcattatagcgttcatcaagctgatcacgagcagttaagtctgaccataacgaagcacatataactgttccgacagacatcaaccacaaacat |
52874453 |
T |
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| Q |
106 |
ccaacagagaaatctatagttggacgagttggagcatatagtagaacttccactgaaatgggcaatttaaaatcaaccaattgtaaatctcgtgcaaaaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52874452 |
ccaacagagaaatctatagttggacgagttggagcatatagtagaacttccactgaaatgggcaattcaaaatcaaccaattgtaaatctcgtgcaaaaa |
52874353 |
T |
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| Q |
206 |
ggaatctaatagaaatatatgtt |
228 |
Q |
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| T |
52874352 |
ggaatctaatagaaatatatgtt |
52874330 |
T |
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