View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0837_high_3 (Length: 557)
Name: NF0837_high_3
Description: NF0837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0837_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 26 - 548
Target Start/End: Original strand, 34976693 - 34977232
Alignment:
| Q |
26 |
tgggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatcccaccctttgatcacttgcccttcattgacaaaaacaataaca |
125 |
Q |
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| T |
34976693 |
tgggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatcccaccctttgatcacttgcccttcattgacaaaaacaataaca |
34976792 |
T |
|
| Q |
126 |
aattaactgcagttcattgatgaagtaaagtcctaagagatctcagtctttggataaagttttatgaaacagagacacggatgttggacacgataaaaca |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34976793 |
aattaactgcagttcattgatgaagtaaagtcctaagagatctcagtcttcggatgaagttttatgaaacagagacacggatgttggaaacgataaaaca |
34976892 |
T |
|
| Q |
226 |
ctgacaatgaaaataattgtaacacacatatcaatcacccagacatatcttcaatctaaagtgtttgtacg-----------------atatacaaaaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
34976893 |
ctgacaatgaaaataattgtaacacacatatcaatcacccagacatatcttcaatctaaagtgtctgtacgataacttaaccaatacaatatacaaaaat |
34976992 |
T |
|
| Q |
309 |
cacatttgtgtaaataaaagatctattttaatatgatactatcattgtatagttcatttcctcctcatacacagcaacatgattaaaaacattgaatatt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976993 |
cacatttgtgtaaataaaagatctattttaatatgatactatcattgtatagttcatttcctcctcatacacagcaacatgattaaaaacattgaatatt |
34977092 |
T |
|
| Q |
409 |
catcattttatacctcgacaaaatttacaagaggaaaacagaaagttaaatattaccttgaccaagcttaaatttgaaagtggtacccctatcacggctc |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34977093 |
catcattttatacctcgacaaaatttacaagaggaaaacagaaagttaaatattaccttgaccaagcttaaacttgaaagtggtacccctatcacggctc |
34977192 |
T |
|
| Q |
509 |
gagtcaaatttggttccatcaagcaaaattccagtataat |
548 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
34977193 |
gagtcaaatttggttccatcaagcaaaattccagtataat |
34977232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 3496420 - 3496488
Alignment:
| Q |
36 |
gtgaaaatggcattttcacccttcttcatggttttgataccttcatcccaccctttgatcacttgccct |
104 |
Q |
| |
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||||||| ||||||||||| |||||||||||||| || || |||||||| ||||| || ||||||||| |
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| T |
3496420 |
gtgaaaagagcattttcacctttcttcatggttttaattccctcatcccatcctttaataacttgccct |
3496488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 18848995 - 18849054
Alignment:
| Q |
45 |
gcattttcacccttcttcatggttttgataccttcatcccaccctttgatcacttgccct |
104 |
Q |
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||||||||||| |||||||||||||| |||||||||||||| |||| || ||||||||| |
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| T |
18848995 |
gcattttcacctttcttcatggttttaataccttcatcccatccttgaattacttgccct |
18849054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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