View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0837_high_7 (Length: 471)

Name: NF0837_high_7
Description: NF0837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0837_high_7
NF0837_high_7
[»] chr5 (5 HSPs)
chr5 (97-308)||(3374659-3374870)
chr5 (98-371)||(3402765-3403057)
chr5 (99-445)||(3368788-3369125)
chr5 (174-377)||(3372670-3372867)
chr5 (174-238)||(3377529-3377593)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 97 - 308
Target Start/End: Original strand, 3374659 - 3374870
Alignment:
Q  97 agtaatagtatcaatttttcttaattcaatgaacttatatggagttcaggtgaagtttgttattcatatgcagtttctgtgtttctttcaataatgcaaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3374659 agtaatagtatcaatttttcttaattcaatgaacttatatggagttcaggtgaagtttgttattcatatgcagtttctgtgtttctttcaataatgcaaa 3374758  T
Q  197 ttgaatttcagggtagatatgacattcaatctttatctggctggttcatgccaatggaaagtcagggaaggtcaggtgacatgaatgtttctttagcgga 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  3374759 ttgaatttcagggtagatatgacattcaatctttatctggctggttcatgccaatggaaagtcgcggaaggtcaggtgacatgaatgtttctttagcgga 3374858  T
Q  297 tctagacggtaa 308  Q
    ||||||||||||    
T  3374859 tctagacggtaa 3374870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 371
Target Start/End: Original strand, 3402765 - 3403057
Alignment:
Q  98 gtaatagtatcaatttttcttaattcaatgaacttatatggagttcagg--------tgaagtttgttattcatatgcagtttctgtgt--ttctttcaa 187  Q
    ||||||||||||||||||| |||||||||| ||| ||||| |||| |||        || | ||||||| |||||||  ||||||||||  |||||||||    
T  3402765 gtaatagtatcaatttttcctaattcaatgtactaatatgaagtttaggaccttaggtgtactttgttaatcatatgttgtttctgtgtgattctttcaa 3402864  T
Q  188 taatgcaaattgaatttcagggtagatatgacattcaatctttatctggctggttcatgccaatggaaagtcagggaagg---------tcaggtgacat 278  Q
    |||||||||||||| |||| ||||||||||| |||| | ||||||||||||  |||||||||| |||||     ||||||         || |||| |||    
T  3402865 taatgcaaattgaagttcacggtagatatgaaattcgaactttatctggctcattcatgccaaaggaaaagtgcggaaggcgaagtatatctggtggcat 3402964  T
Q  279 gaatgtttctttagcggatctagacggtaatgttgttgccggtcacgtagctggtccattggtggctgcaagtcttgtaactgtaagtacctg 371  Q
    || ||||||||| | ||||||| | ||  ||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  3402965 gagtgtttctttggtggatctacatggacatgttgttggcggtcgcgtagctggtccattggtggctgcaagtcctgtaaatgtaagtacctg 3403057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 445
Target Start/End: Original strand, 3368788 - 3369125
Alignment:
Q  99 taatagtatcaatttttcttaattcaatgaacttatatggagttcaggtgaagtttgttattcatatgcagtttctgtgt---------ttctttcaata 189  Q
    |||||| ||||||||||| |||||||||| ||| |||||||||| | ||| ||||||||||| |||||  |||||| |||         ||||||||| |    
T  3368788 taatagcatcaatttttcctaattcaatgcactcatatggagtttacgtgtagtttgttatttatatgttgtttctatgtgtttctactttctttcaaca 3368887  T
Q  190 atgcaaattgaatttcagggtagatatgacattcaatctttatctggctggttcatgccaatggaaagtcagggaaggtcaggtgacatgaatgtttctt 289  Q
    ||||||||||||||||| || |  ||| | ||||||||||||||||||| ||||||||               | || ||  ||| ||||||||||||||    
T  3368888 atgcaaattgaatttcacggcatttatcaaattcaatctttatctggctcgttcatgc---------------gtagatctagtggcatgaatgtttctt 3368972  T
Q  290 tagcggatctagacggtaatgttgttgccggtcacgtagctggtccattggtggctgcaagtcttgtaactgtaagtacctgtgaaggaaactatatgtc 389  Q
    | | ||||||||| || ||||||||||  |||| |||||||||||||||||||| |||||||| || | ||||||||||||| ||| | ||  ||| ||     
T  3368973 ttgtggatctagatggaaatgttgttggtggtcgcgtagctggtccattggtggttgcaagtcctgcagctgtaagtacctgggaaaggaataataggtt 3369072  T
Q  390 tataaaatcaaatggaatatttaaaggctaataatagcctaataagtttttgacat 445  Q
    |||||||||||||  |||||||| ||||   |||||| |||||| |||||||||||    
T  3369073 tataaaatcaaataaaatatttagaggc---taatagtctaatatgtttttgacat 3369125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 377
Target Start/End: Original strand, 3372670 - 3372867
Alignment:
Q  174 tgtgtttctttcaataatgcaaattgaatttcagggtagatatgacattcaatctttatctggctggttcatgccaatggaaagtcagggaaggtcaggt 273  Q
    ||||||||||| ||||||| |||||||||||||||||| ||||   |||  |||||||||||||   ||||||||||  |||||||  ||       |||    
T  3372670 tgtgtttctttaaataatgtaaattgaatttcagggtaaatattgtattgtatctttatctggcccattcatgccaaacgaaagtcgcgg------tggt 3372763  T
Q  274 gacatgaatgtttctttagcggatctagacggtaatgttgttgccggtcacgtagctggtccattggtggctgcaagtcttgtaactgtaagtacctgtg 373  Q
    | ||||| | ||||||||  || |||||| ||  |||||||||  |||  |||||||||||||||| |||||| |||||  ||||  ||||||||||| |    
T  3372764 ggcatgagtatttctttaatgggtctagatggacatgttgttgaaggttgcgtagctggtccattgatggctgaaagtccagtaaaagtaagtacctggg 3372863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 3377529 - 3377593
Alignment:
Q  174 tgtgtttctttcaataatgcaaattgaatttcagggtagatatgacattcaatctttatctggct 238  Q
    ||||||||||| ||||||| |||||||||||||||||| |||||| | |  ||||||||||||||    
T  3377529 tgtgtttctttaaataatgtaaattgaatttcagggtaaatatgaaaatatatctttatctggct 3377593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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