View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0837_low_1 (Length: 587)
Name: NF0837_low_1
Description: NF0837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0837_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 103 - 529
Target Start/End: Original strand, 34274528 - 34274954
Alignment:
| Q |
103 |
ctactaccaccattacatgcacgttaaatttcacatcttcaatgtaatcatcttagctatgaaaaatgaacttgatatttgaattttgatcttcattatg |
202 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34274528 |
ctaccaccaccattacatgcacgttgaatttcacatcttcaatgtaatcatcttagctatgacaaatgaacttgatatttgaattttgatcttcattatg |
34274627 |
T |
|
| Q |
203 |
ttcatagatattgattctattgactgatctatcgaaatccagtctgatctatagaagaatataataatataaatgcactgtcaaataaataacagcagta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34274628 |
ttcatagatattgattctattgactgatctatcgaaatccagtctgatctatagaaaaatataataatataaatgcactgtcaaataaataacagcagta |
34274727 |
T |
|
| Q |
303 |
tgttatgcgtaacaagttgattttgaattggttgaatttacttgtgcattttggttcagaacaggaaactaaaaaggtgaagatggctaagcatgtcatt |
402 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34274728 |
tgttatacgtaacaagttgattttgaattggttgaatttacttgtgcattttggttcagaacaggaaactaaaaaggtgaagatggctaagcatgtcatt |
34274827 |
T |
|
| Q |
403 |
aaggtggagtccgttcctgaggaacaaatcgacattacaagtgcagaagtcgttcctgatgcatctaacgaaattgaggaccctgatgcaactgagtatt |
502 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34274828 |
aagttggagtccgttcctgaggaacaaatcgacattacaagtgcagaagtcgttcctgatgcatctaacgaaattgaggaccctgatgcaactgagtatt |
34274927 |
T |
|
| Q |
503 |
caagttcgtttgctgataccatctctg |
529 |
Q |
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| T |
34274928 |
caagttcgtttgctgataccatctctg |
34274954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 521
Target Start/End: Original strand, 34281707 - 34281750
Alignment:
| Q |
478 |
gaggaccctgatgcaactgagtattcaagttcgtttgctgatac |
521 |
Q |
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| T |
34281707 |
gaggaccctgatgcaactgaatattcgagttcctttgctgatac |
34281750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 394
Target Start/End: Complemental strand, 20229857 - 20229778
Alignment:
| Q |
315 |
caagttgattttgaattggttgaatttacttgtgcattttggttcagaacaggaaactaaaaaggtgaagatggctaagc |
394 |
Q |
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|||||| |||||||||| ||||||||| || || |||| | || ||||||| |||||||||||||||||||||||||| |
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| T |
20229857 |
caagttaattttgaattcattgaatttagttatgaatttagattttgaacaggtaactaaaaaggtgaagatggctaagc |
20229778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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