View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0837_low_12 (Length: 284)

Name: NF0837_low_12
Description: NF0837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0837_low_12
NF0837_low_12
[»] chr8 (1 HSPs)
chr8 (56-233)||(42929494-42929671)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 56 - 233
Target Start/End: Complemental strand, 42929671 - 42929494
Alignment:
Q  56 atcatcatagcatacacgttactttccaagtcttcaaccgaggaaatgaaattcaatactatgcctactcacattaaacatgtatgactttgtgagacaa 155  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42929671 atcatcatagcatatacgttactttccaagtcttcaaccgaggaaatgaaattcaatactatgcctacccacattaaacatgtatgactttgtgagacaa 42929572  T
Q  156 cagataaaagaaaactcacacttttattttctttggccaccggtttccggtcatcggttgaactaattgtctaatttt 233  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42929571 cagataaaagaaaattcacacttttattttctttggccaccggtttccggtcatcggttgaactaattgtctaatttt 42929494  T

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