View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0837_low_19 (Length: 252)
Name: NF0837_low_19
Description: NF0837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0837_low_19 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 24712354 - 24712127
Alignment:
| Q |
11 |
caaaggcagcctacaacagaaacaccaagagctcactaccacccacaaaaacaccaataaaaccaccaataaaacatccacctccctacctataaaaacg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |
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| T |
24712354 |
caaaggcagcctacaacagaaacaccaagagctcactaccacccacaacaacaccaataaaac------------atccacctccctaccta-aaaaacg |
24712268 |
T |
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| Q |
111 |
tctaccaccccacttaatcagctcccgttcatcaatgttcaaacaccagatccgagtccttattatacacgaccaccccatccgctgattatgaatggtt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24712267 |
tctaccaccccacttaatcagctcccgttcatcaatgttcaaacaccagatca-agtccttattatacacgaccaccccatctgctgattatgaatggtt |
24712169 |
T |
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| Q |
211 |
atgttgacattaaacatattatgtaaagctttctccagaaca |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
24712168 |
atgttgacattaaacatattatgtaaagctttctccagaaca |
24712127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 31424073 - 31424023
Alignment:
| Q |
11 |
caaaggcagcctacaacagaaacaccaagagctcactaccacccacaaaaa |
61 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||| |||| |
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| T |
31424073 |
caaaggcagcctacaacagaaacaccaagagtacactaccatccaccaaaa |
31424023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 31424031 - 31423970
Alignment:
| Q |
73 |
ccaccaataaaacatccacctccctacctataaaaacgtctacca-ccccacttaatcagctc |
134 |
Q |
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||||||| |||||||||||||||||||||| || ||| || |||| ||||||||||||||||| |
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| T |
31424031 |
ccaccaaaaaaacatccacctccctaccta-aacaacatcaaccacccccacttaatcagctc |
31423970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 17820171 - 17820344
Alignment:
| Q |
19 |
gcctacaacagaaacaccaagagctcactaccacccacaaaaacaccaataaaaccaccaataaaacatccacctccctacctataaaaacgtctaccac |
118 |
Q |
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||||||||| |||||||| |||| ||||||||||||| |||| ||| || ||| |||| |||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
17820171 |
gcctacaactgaaacaccgagagatcactaccacccataaaatcactaa-aaacccactaatataacatccacctccctacctaaaaaaatgtctaccac |
17820269 |
T |
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| Q |
119 |
cccacttaatcagctcccgttcatc-aatgttcaaacaccagatccgagtccttattatacacgaccaccccatc |
192 |
Q |
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|||| |||| |||||||||||||| ||||||| ||| ||| |||||||| |||||||||||||||||||||||| |
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| T |
17820270 |
cccatataataagctcccgttcatcaaatgttccaacgccatatccgagttcttattatacacgaccaccccatc |
17820344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 3679149 - 3679106
Alignment:
| Q |
20 |
cctacaacagaaacaccaagagctcactaccacccacaaaaaca |
63 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
3679149 |
cctacaacagaaacaccaatagctcaccaccacccacaaaaaca |
3679106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 15817737 - 15817791
Alignment:
| Q |
12 |
aaaggcagcctacaacagaaacaccaagagctcactaccacccacaaaaacacca |
66 |
Q |
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|||||| || ||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
15817737 |
aaaggcggcttacaacataaacaccaagagctcaccaccacccacaaaaacacca |
15817791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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