View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0838_high_10 (Length: 254)

Name: NF0838_high_10
Description: NF0838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0838_high_10
NF0838_high_10
[»] chr6 (10 HSPs)
chr6 (22-241)||(6525656-6525875)
chr6 (22-241)||(6495958-6496177)
chr6 (22-241)||(6462495-6462714)
chr6 (22-241)||(6464618-6464837)
chr6 (61-241)||(6473717-6473897)
chr6 (109-241)||(1842428-1842561)
chr6 (25-226)||(6504765-6504969)
chr6 (117-205)||(6527573-6527661)
chr6 (105-175)||(1846170-1846241)
chr6 (25-84)||(6516944-6517003)
[»] chr7 (3 HSPs)
chr7 (189-237)||(46382872-46382920)
chr7 (22-101)||(46382732-46382811)
chr7 (36-120)||(9666103-9666187)
[»] chr4 (1 HSPs)
chr4 (36-120)||(13537127-13537211)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 6525656 - 6525875
Alignment:
Q  22 catcatcaaaaccttttaactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaac 121  Q
    ||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||    
T  6525656 catcatcaaaacccttcaactttcttatcttctgctgtgcactttcattatcataaatcccttgcaaggcataaacaaaccccttccaaccctcttcaac 6525755  T
Q  122 accatccctttttaaagcatgtaatgtccactccacaagttccttcacatacttcgcatcagagaataagacttcagaaataggaagcaatggtaagagc 221  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||| |  |||||||||| |||||||||||||| ||||||||||||||||||    
T  6525756 accatccctttttaaagcaggtaatgtccactccacaagtcccttcacatacataacatcagagaacaagacttcagaaattggaagcaatggtaagagc 6525855  T
Q  222 tgaatcccaagcctacattc 241  Q
    ||||||||||||||||||||    
T  6525856 tgaatcccaagcctacattc 6525875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 6495958 - 6496177
Alignment:
Q  22 catcatcaaaaccttttaactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaac 121  Q
    |||||||||| |||||||| |||||||| |||| || |||| |||| ||||||||||||||||||||||||||||||||||| ||||| || ||| ||||    
T  6495958 catcatcaaatccttttaaatttcttatattcttcaatgcattttccttatcataaattccttgtaaggcatatacaaaccctttccatccttcttcaac 6496057  T
Q  122 accatccctttttaaagcatgtaatgtccactccacaagttccttcacatacttcg-catcagagaataagacttcagaaataggaagcaatggtaagag 220  Q
    |||||| ||||| |||||| | |||| ||| || ||||||| ||||||||| |||| |||||||||| || |||||||||||||||||||||||||||||    
T  6496058 accatctcttttcaaagcaggcaatgcccattcaacaagttgcttcacata-ttcgacatcagagaacaatacttcagaaataggaagcaatggtaagag 6496156  T
Q  221 ctgaatcccaagcctacattc 241  Q
    |||||  |||| |||||||||    
T  6496157 ctgaactccaaccctacattc 6496177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 6462714 - 6462495
Alignment:
Q  22 catcatcaaaaccttttaactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaac 121  Q
    |||||||||| |||||||| |||||||| |||| || |||| |||| |||||||||||||||||||| |||||||||||||| ||||| || ||| ||||    
T  6462714 catcatcaaatccttttaaatttcttatattcttcaatgcagtttccttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaac 6462615  T
Q  122 accatccctttttaaagcatgtaatgtccactccacaagttccttcacatacttcgcatcagagaataagacttcagaaataggaagcaatggtaagagc 221  Q
    |||||| ||||| |||||| | |||||||| || ||||||| ||||||||| |   |||||||||| || |||||||||||||||| |||||||||||||    
T  6462614 accatctcttttcaaagcaggcaatgtccattcaacaagttgcttcacatattcaacatcagagaacaatacttcagaaataggaaccaatggtaagagc 6462515  T
Q  222 tgaatcccaagcctacattc 241  Q
    ||||| ||||| ||||||||    
T  6462514 tgaattccaagtctacattc 6462495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 6464618 - 6464837
Alignment:
Q  22 catcatcaaaaccttttaactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaac 121  Q
    ||||||||||||| || ||  |||||||||||| || | |||||||||||||||||| |||||  |||||||| |||||||| ||||| || ||||||||    
T  6464618 catcatcaaaaccattcaagcttcttatcttcttcaatccactttcattatcataaactccttccaaggcatagacaaaccctttccatccttctccaac 6464717  T
Q  122 accatccctttttaaagcatgtaatgtccactccacaagttccttcacatacttcgcatcagagaataagacttcagaaataggaagcaatggtaagagc 221  Q
    ||| ||||| || |||||| | ||||||||||||||||||||||||||| | |   |||  || ||||||| ||||||||| ||||||||||||||||||    
T  6464718 accttccctattcaaagcaggcaatgtccactccacaagttccttcacaaaatcaacatttgaaaataagaattcagaaattggaagcaatggtaagagc 6464817  T
Q  222 tgaatcccaagcctacattc 241  Q
    ||||||||||||||||||||    
T  6464818 tgaatcccaagcctacattc 6464837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 61 - 241
Target Start/End: Complemental strand, 6473897 - 6473717
Alignment:
Q  61 cactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaacaccatccctttttaaagcatgtaatgtccactccacaag 160  Q
    ||||||||||||||||||||||||| || ||||| ||||| || ||||| || ||| ||||||| ||||| ||||||||| | |||||||||||||||||    
T  6473897 cactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaacaccttccctatttaaagcaagcaatgtccactccacaag 6473798  T
Q  161 ttccttcacatacttcgcatcagagaataagacttcagaaataggaagcaatggtaagagctgaatcccaagcctacattc 241  Q
    |||||||||||| |   |||| || || || |||||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  6473797 ttccttcacataatcaacatctgaaaacaaaacttcagaaataggaatcaatggtaggagctgaattccaagcctacattc 6473717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 1842561 - 1842428
Alignment:
Q  109 aaccctctccaacaccatccctttttaaagcatgt-aatgtccactccacaagttccttcacatacttcgcatcagagaataagacttcagaaataggaa 207  Q
    |||||||||||||||||||||||| ||||| | |  |||||||||||||||||| |||||||||||||  |||||||| | || | |||||||||||| |    
T  1842561 aaccctctccaacaccatccctttctaaagaaaggcaatgtccactccacaagtcccttcacatacttaacatcagaggacaaaatttcagaaataggga 1842462  T
Q  208 gcaatggtaagagctgaatcccaagcctacattc 241  Q
    | | ||||||||||||||| || |||| ||||||    
T  1842461 gtagtggtaagagctgaatgccgagccaacattc 1842428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 6504765 - 6504969
Alignment:
Q  25 catcaaaaccttttaactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaacacc 124  Q
    |||||||||| || ||  |||||||||||| || ||||||||||||||||||||||||||  || | |||||  || |||||||| || |||||||||||    
T  6504765 catcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatcccttccatccttctccaacacc 6504864  T
Q  125 a---tccctttttaaagcatgtaatgtccactccacaagttccttcacatacttcgcatcagagaataagacttcagaaataggaagcaatggtaagagc 221  Q
    |   ||||| || |||||| | ||||||||||| ||||| || || ||||| |   ||||||| || ||  ||||||||||||||  ||||||||  |||    
T  6504865 accttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtataagc 6504964  T
Q  222 tgaat 226  Q
    |||||    
T  6504965 tgaat 6504969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 6527573 - 6527661
Alignment:
Q  117 ccaacaccatccctttttaaagcatgtaatgtccactccacaagttccttcacatacttcgcatcagagaataagacttcagaaatagg 205  Q
    |||| ||| ||||||||||| ||| |||||||||| || || ||||||||||||||||| |||||||| || || ||||||||||||||    
T  6527573 ccaataccttccctttttaaggcaggtaatgtccattcaactagttccttcacatactttgcatcagaaaacaaaacttcagaaatagg 6527661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 1846241 - 1846170
Alignment:
Q  105 ttccaaccctctccaacaccat-ccctttttaaagcatgtaatgtccactccacaagttccttcacatactt 175  Q
    ||||||||||||||| |||| | ||||||| |||||| |||||||| ||||||||||| |||||||||||||    
T  1846241 ttccaaccctctccatcaccgttcccttttcaaagcaagtaatgtcgactccacaagtcccttcacatactt 1846170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 6517003 - 6516944
Alignment:
Q  25 catcaaaaccttttaactttcttatcttctgcagtgcactttcattatcataaattcctt 84  Q
    |||||||||| || ||  |||||||||||| || ||||||||||||||||||||||||||    
T  6517003 catcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattcctt 6516944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 46382872 - 46382920
Alignment:
Q  189 aagacttcagaaataggaagcaatggtaagagctgaatcccaagcctac 237  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  46382872 aagacttcagaaataggaaacaatggtaagagctgaatcccaaggctac 46382920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 46382732 - 46382811
Alignment:
Q  22 catcatcaaaaccttttaactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaac 101  Q
    ||||||||||||| |||||||||||||| || | |||||||| ||  |||||||||||| |   ||||||||||||||||    
T  46382732 catcatcaaaaccctttaactttcttatttttttcagtgcacctttgttatcataaatttcccttaaggcatatacaaac 46382811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 9666187 - 9666103
Alignment:
Q  36 tttaactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaa 120  Q
    ||||||||||||||||||| ||  ||||  || |||||||||||||| || || ||||| | ||| ||||||||||| |||||||    
T  9666187 tttaactttcttatcttctccaaagcaccatccttatcataaattccctgcaaagcatacaaaaaacccttccaaccttctccaa 9666103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 13537211 - 13537127
Alignment:
Q  36 tttaactttcttatcttctgcagtgcactttcattatcataaattccttgtaaggcatatacaaaccccttccaaccctctccaa 120  Q
    ||||||||||||||||||| ||  ||||  || |||||||||||||| || || ||||| | ||| ||||||||||| |||||||    
T  13537211 tttaactttcttatcttctccaaagcaccatccttatcataaattccctgcaaagcatacaaaaaacccttccaaccttctccaa 13537127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2727 times since January 2019
Visitors: 6167