View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0838_high_13 (Length: 209)
Name: NF0838_high_13
Description: NF0838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0838_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 26879216 - 26879327
Alignment:
| Q |
1 |
aagatccataatacaatagttctgcgacaccttaatactttccctaaccacgctaacaataccaatcagacacagcctgaaaaattgatgttctaacctg |
100 |
Q |
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| T |
26879216 |
aagatccataatacaatagttctgcgacaccttaatactttccctaaccacgctaacaataccaatcagacacagcccgaaaaattgatgttctaacctg |
26879315 |
T |
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| Q |
101 |
ctccacgctccc |
112 |
Q |
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||||| |||||| |
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| T |
26879316 |
ctccatgctccc |
26879327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 40248742 - 40248809
Alignment:
| Q |
45 |
taaccacgctaacaataccaatcagacacagcctgaaaaattgatgttctaacctgctccacgctccc |
112 |
Q |
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||||||| |||||||||||||||| |||||| ||| ||| | |||| |||||||||| |||||||||| |
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| T |
40248742 |
taaccacactaacaataccaatcaaacacagtctggaaattagatgctctaacctgcaccacgctccc |
40248809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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