View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0838_low_3 (Length: 371)
Name: NF0838_low_3
Description: NF0838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0838_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 68 - 360
Target Start/End: Original strand, 5255696 - 5255988
Alignment:
| Q |
68 |
ctatgagggaaaataaacttttactctctcacctgagaatccaaacacgcgtatatattcgatgaagatgtttcaataataattcaaaactgagtactaa |
167 |
Q |
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| T |
5255696 |
ctatgagggaaaataaacttttactctctcacctgagaatccaaacacgcgtatatattcgatgaagatgtttcaataataattcaaaactgagtactaa |
5255795 |
T |
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| Q |
168 |
tagaattagagtcacatgccaaaaactagatacaagatggaaggtttgtaacttaaattaacatccctataggattacataaacttagcatggataaaat |
267 |
Q |
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| T |
5255796 |
tagaattagagtcacatgccaaaaactagatacaagatggaaggtttgtaacttaaattaacatccctataggattacataaacttagcatggataaaat |
5255895 |
T |
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| Q |
268 |
ctaaaaacttcagccgaaaatggaaaacaattgttgcctatacaaaggtatgcaggacccaaaccattgtcgtgccatttttcattgattcat |
360 |
Q |
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| T |
5255896 |
ctagaaacttcagccaaaaatggaaaacaattgttgcctatacaaaggtatgcaggacccaaaccattgtcgtgccatttttcattgattcat |
5255988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 132 - 323
Target Start/End: Original strand, 5180429 - 5180619
Alignment:
| Q |
132 |
aagatgtttcaataataattcaaaactgagtactaatagaattagagtcacatgccaaaaactagatacaagatggaaggtttgtaacttaaattaacat |
231 |
Q |
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| T |
5180429 |
aagatgtttcaataataattcata-ctgagtactaatagagttagagtcacatgcaaaaaactagatatatcacggaaggtttgtaacttaaattaacat |
5180527 |
T |
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| Q |
232 |
ccctataggattacataaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgttgcctatacaaaggtatgcagg |
323 |
Q |
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| T |
5180528 |
ctctataggattacaaaaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgttgcctatacaaaggtatacagg |
5180619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 70 - 311
Target Start/End: Original strand, 5282809 - 5283051
Alignment:
| Q |
70 |
atgagggaaaataaacttttactctctcacctgagaatccaaacacgcgtatatattcgatgaagatgtttcaataataattcaaaactgagtactaata |
169 |
Q |
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|||||||||||| |||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
5282809 |
atgagggaaaatcaactttcactctatcacctgagaatccaaacacacaaatatattcgatgaagatgtttcgataataattcaaaactgagtactaaca |
5282908 |
T |
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| Q |
170 |
gaattagagtcacatgccaaaaactagatacaagatggaaggtttgtaacttaaattaacatccctataggattacataaacttagcatggataaaatct |
269 |
Q |
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| T |
5282909 |
gaattagagtcacatgccaaaaactagatataaaataggaggtttgtaacttcaattaacatctctagagtattacaaaaacttagcattgatacaatct |
5283008 |
T |
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| Q |
270 |
aaaaacttcagccgaaaatggaaaacaa-ttgttgcctataca |
311 |
Q |
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| T |
5283009 |
agaaacttcagccaaaaaagagatacaacttgttgcctataca |
5283051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 5334599 - 5334555
Alignment:
| Q |
256 |
catggataaaatctaaaaacttcagccgaaaatggaaaacaattg |
300 |
Q |
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| T |
5334599 |
catggataaaatctagaaacttcagccaaaaatggaaaacaattg |
5334555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 5351878 - 5351832
Alignment:
| Q |
256 |
catggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt |
302 |
Q |
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||||||||||||| | ||||| ||||| ||||||||||||||||||| |
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| T |
5351878 |
catggataaaatcaagaaactacagccaaaaatggaaaacaattgtt |
5351832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 5687616 - 5687572
Alignment:
| Q |
259 |
ggataaaatctaaaaacttcagccgaaaatggaaaacaattgttg |
303 |
Q |
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| T |
5687616 |
ggataaaatctagaaactgcagccaaaattggaaaacaattgttg |
5687572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 47985112 - 47985177
Alignment:
| Q |
237 |
taggattacataaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt |
302 |
Q |
| |
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|||||||||| ||| ||| |||| |||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
47985112 |
taggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt |
47985177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 47994399 - 47994464
Alignment:
| Q |
237 |
taggattacataaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt |
302 |
Q |
| |
|
|||||||||| ||| ||| |||| |||||||||| ||||||||||| ||| ||||||||||||||| |
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|
| T |
47994399 |
taggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt |
47994464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 48003686 - 48003751
Alignment:
| Q |
237 |
taggattacataaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt |
302 |
Q |
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|||||||||| ||| ||| |||| |||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
48003686 |
taggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt |
48003751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 48012971 - 48013036
Alignment:
| Q |
237 |
taggattacataaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt |
302 |
Q |
| |
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|||||||||| ||| ||| |||| |||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
48012971 |
taggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt |
48013036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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