View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0838_low_4 (Length: 360)
Name: NF0838_low_4
Description: NF0838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0838_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 6 - 267
Target Start/End: Original strand, 27991502 - 27991763
Alignment:
| Q |
6 |
ctcgaacaatatatctacatttggatatgcataataaaaggttacttgcattctactaaaaaacaatttttgtggatgggaaaataaattgaaaatagtg |
105 |
Q |
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| T |
27991502 |
ctcgaaaaagatatctacatttggatatgcataataaaaggttacttgcattctactaaaaaacaatttttgtggatgggaaaataaattgaaaatagtg |
27991601 |
T |
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| Q |
106 |
catgatcacagtatactttggtttgtgagttctattgaactcttatacatattaggggtgcacnnnnnnnnnnnnnnttgaatcgaactgaaccaaattg |
205 |
Q |
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| T |
27991602 |
catgatcatagtatactttggtttgtgagttctattgaactcttatacatattaggggaggacaaaaaaactaaaaactgaatcgaactgaaccgaattg |
27991701 |
T |
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| Q |
206 |
atattgaaccaaaccggtatgtaaaagttttgatccgatccttgcttaaaggagcacttatt |
267 |
Q |
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||||| |||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27991702 |
atattaaaccgaactggtatgtaaaagctttgatccgatccttgcttaaaggagcacttatt |
27991763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 28001562 - 28001708
Alignment:
| Q |
16 |
atatctacatttggatatgcataataaaaggttacttgcattctactaaaaaacaatttttgtggatgggaaaataaattgaaaatagtgcatgatcaca |
115 |
Q |
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| T |
28001562 |
atatctacatatggatatgcacaataaaaagttacttgcattcaac---aaatcaatttttgtggatgggaaaataaattgaaaatagtgcatgatcata |
28001658 |
T |
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| Q |
116 |
gtatactttggtttgtgagttctattgaactcttatacatattaggggtg |
165 |
Q |
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| T |
28001659 |
gtatactttggtttgcgagttctaccgaactcatatacaaattaggggtg |
28001708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 24004008 - 24004070
Alignment:
| Q |
184 |
tgaatcgaactgaaccaaattgatattgaaccaaaccggtatgtaaaagttttgatccgatcc |
246 |
Q |
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|||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||| |
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| T |
24004008 |
tgaaccgaactgaaccgaattgatattgaaccgaaccggcatgtaaaagttttgaaccgatcc |
24004070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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