View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0838_low_6 (Length: 349)
Name: NF0838_low_6
Description: NF0838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0838_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 36575144 - 36575449
Alignment:
| Q |
11 |
acaatatctgaaccatcaacttgcgtgagctgtaaaacgaagcataagaacaacgagtatgcattgatatggaagaagagtgaagtgaaattgaacatat |
110 |
Q |
| |
|
|||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36575144 |
acaaaatccgaaccaccaacttgcgtgagctgtaaaacgaagcataagaacaacgagtatgcattgatatggaagaagagtgaagtgaaattgaacatat |
36575243 |
T |
|
| Q |
111 |
taacacactgacgtgttttcctaatgacaccaataagataattttttgaagaacttttggaagaaacaaaaattgcaacaatggcaacagtaggtagagg |
210 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36575244 |
taacacactgacgtgttttcccaatgacaccaataagataattttttgaagaattttttgaagaaacaaaaattgcaacaatggcaaca----gtagagg |
36575339 |
T |
|
| Q |
211 |
agcaagaacgcgaacctatttccctccaacagtaaaagaaactcaatcataagtatactcaattccctaaaatgttaagtattttattatttcaattggt |
310 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36575340 |
agcaagaacccaaacctatttccctccaacagtgagagaaactcaatcataagtatactcaattccctaaaatgttaagtattttattgtttcaattggt |
36575439 |
T |
|
| Q |
311 |
aacaggtatt |
320 |
Q |
| |
|
|||||||||| |
|
|
| T |
36575440 |
aacaggtatt |
36575449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1965 times since January 2019
Visitors: 6152