View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0838_low_8 (Length: 323)

Name: NF0838_low_8
Description: NF0838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0838_low_8
NF0838_low_8
[»] chr8 (1 HSPs)
chr8 (52-207)||(441192-441351)
[»] chr4 (5 HSPs)
chr4 (52-208)||(45781367-45781538)
chr4 (52-158)||(14565115-14565224)
chr4 (117-207)||(19599939-19600029)
chr4 (268-307)||(16212702-16212741)
chr4 (259-307)||(5513996-5514044)
[»] scaffold0005 (1 HSPs)
scaffold0005 (52-158)||(252151-252260)
[»] chr2 (1 HSPs)
chr2 (117-206)||(8040859-8040948)
[»] chr7 (1 HSPs)
chr7 (268-307)||(15522680-15522719)
[»] chr6 (4 HSPs)
chr6 (260-307)||(12658323-12658370)
chr6 (260-307)||(12660815-12660862)
chr6 (268-307)||(31965944-31965983)
chr6 (260-307)||(23517682-23517730)
[»] chr5 (1 HSPs)
chr5 (268-307)||(24164690-24164729)
[»] chr1 (1 HSPs)
chr1 (268-307)||(26191910-26191949)


Alignment Details
Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 52 - 207
Target Start/End: Complemental strand, 441351 - 441192
Alignment:
Q  52 atttatgtttggttttaaaaaa-ggtaaattgtttctggatagcaatcgcacgtt---cagactctagtatttgaagcttttgcggtaaaccaaatcaat 147  Q
    |||| ||||||| ||||||||| ||||||||| |||||||||||||  |||||||   |||||||||||||| ||||||||| |||| | ||||||||||    
T  441351 atttttgtttggctttaaaaaacggtaaattgcttctggatagcaactgcacgtttaccagactctagtattcgaagcttttacggtgagccaaatcaat 441252  T
Q  148 tctacacttttgttaaacaattatattatataatattccagtttgtctattatgtccttg 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  441251 tctacacttttgttaaacagttatattatataatattccagtttgtctattttgtccttg 441192  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 52 - 208
Target Start/End: Complemental strand, 45781538 - 45781367
Alignment:
Q  52 atttatgtttggttttaaaaaaggtaaattgtttctggatagcaatcgcacgtt---cagactctagtatttgaagcttttgcggtaaaccaaatcaatt 148  Q
    |||||||||||  || ||||||||||||||||||||| ||||||| | ||||||   |||||||||  |||||||||||||||||| |||||||||||||    
T  45781538 atttatgtttgacttaaaaaaaggtaaattgtttctgaatagcaaccacacgtttaccagactctaacatttgaagcttttgcggtgaaccaaatcaatt 45781439  T
Q  149 ctacacttttgttaaacaat------------tatattatataatattccagtttgtctattatgtccttgc 208  Q
    ||| | |||| |||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  45781438 ctatatttttattaaacaattctacactctagtatattatataatattccagtttgtctattatgtccttgc 45781367  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 14565224 - 14565115
Alignment:
Q  52 atttatgtttggttttaaaaaaggtaaattgtttctggatagcaatcgcacgtt---cagactctagtatttgaagcttttgcggtaaaccaaatcaatt 148  Q
    |||||||||||| |||||||||||||||||| |||||||||||||  |||||||   |||||||||||||| ||||||||| |||| | |||||||||||    
T  14565224 atttatgtttggctttaaaaaaggtaaattgcttctggatagcaactgcacgtttaccagactctagtattcgaagcttttacggtgagccaaatcaatt 14565125  T
Q  149 ctacactttt 158  Q
    ||||||||||    
T  14565124 ctacactttt 14565115  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 19600029 - 19599939
Alignment:
Q  117 atttgaagcttttgcggtaaaccaaatcaattctacacttttgttaaacaattatattatataatattccagtttgtctattatgtccttg 207  Q
    ||||||||||| ||||| || | || |||  ||||| ||||| |||||||||||| ||||||||||| || ||||||| |||||| |||||    
T  19600029 atttgaagcttctgcggcaacctaactcatatctactcttttattaaacaattattttatataatatccctgtttgtccattatgcccttg 19599939  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 16212741 - 16212702
Alignment:
Q  268 tttcaggaacaaatatatgaaaaaatgagtcttggagcaa 307  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  16212741 tttcaggaacaaatatatgaaagattgagtcttggagcaa 16212702  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 5514044 - 5513996
Alignment:
Q  259 cttattttgtttcaggaacaaatatatgaaaaaatgagtcttggagcaa 307  Q
    |||||||  |||||||||||||||| ||||| | |||||||||||||||    
T  5514044 cttatttaatttcaggaacaaatatttgaaagattgagtcttggagcaa 5513996  T

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Target: scaffold0005 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 252151 - 252260
Alignment:
Q  52 atttatgtttggttttaaaaaaggtaaattgtttctggatagcaatcgcacgtt---cagactctagtatttgaagcttttgcggtaaaccaaatcaatt 148  Q
    |||||||||||| |||||||||||||||||| |||||||||||||  |||||||   |||||||||||||| ||||||||| |||| | |||||||||||    
T  252151 atttatgtttggctttaaaaaaggtaaattgcttctggatagcaactgcacgtttaccagactctagtattcgaagcttttacggtgagccaaatcaatt 252250  T
Q  149 ctacactttt 158  Q
    ||||||||||    
T  252251 ctacactttt 252260  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 8040859 - 8040948
Alignment:
Q  117 atttgaagcttttgcggtaaaccaaatcaattctacacttttgttaaacaattatattatataatattccagtttgtctattatgtcctt 206  Q
    ||||||||||| ||||| || | || |||||||||| ||||| |||||||||||| ||||||||||| || ||||||  |||||| ||||    
T  8040859 atttgaagcttatgcggcaaccaaactcaattctactcttttattaaacaattattttatataatatccctgtttgttcattatgccctt 8040948  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 15522680 - 15522719
Alignment:
Q  268 tttcaggaacaaatatatgaaaaaatgagtcttggagcaa 307  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  15522680 tttcaggaacaaatatatgaaagattgagtcttggagcaa 15522719  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 12658370 - 12658323
Alignment:
Q  260 ttattttgtttcaggaacaaatatatgaaaaaatgagtcttggagcaa 307  Q
    ||||||| |||||||||||||||| ||||| | |||||||||||||||    
T  12658370 ttattttatttcaggaacaaatatttgaaagattgagtcttggagcaa 12658323  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 12660862 - 12660815
Alignment:
Q  260 ttattttgtttcaggaacaaatatatgaaaaaatgagtcttggagcaa 307  Q
    ||||||| |||||||||||||||| ||||| | |||||||||||||||    
T  12660862 ttattttatttcaggaacaaatatttgaaagattgagtcttggagcaa 12660815  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 31965983 - 31965944
Alignment:
Q  268 tttcaggaacaaatatatgaaaaaatgagtcttggagcaa 307  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  31965983 tttcaggaacaaatatatgaaaaattgaatcttggagcaa 31965944  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 23517730 - 23517682
Alignment:
Q  260 ttattttgtttcaggaacaaatatatgaaaa-aatgagtcttggagcaa 307  Q
    ||||||| |||||||||||||||| |||||| | |||||||||||||||    
T  23517730 ttattttatttcaggaacaaatatttgaaaagattgagtcttggagcaa 23517682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 24164690 - 24164729
Alignment:
Q  268 tttcaggaacaaatatatgaaaaaatgagtcttggagcaa 307  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  24164690 tttcaggaacaaatatatgaaagattgagtcttggagcaa 24164729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 307
Target Start/End: Original strand, 26191910 - 26191949
Alignment:
Q  268 tttcaggaacaaatatatgaaaaaatgagtcttggagcaa 307  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  26191910 tttcaggaacaaatatatgaaagattgagtcttggagcaa 26191949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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