View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839-INSERTION-1 (Length: 356)
Name: NF0839-INSERTION-1
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839-INSERTION-1 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 3084071 - 3083740
Alignment:
| Q |
8 |
atgcattctcaaaataattattacatggaccaagtcaccaaaataaataggaaaagagtgaggaaattaacattttagtactcatatttagtcattcaaa |
107 |
Q |
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| T |
3084071 |
atgcattcacaaaataattattacatggaccaagtcaccaaaataaatgggaaaagagtgaggaaattaacattttagtactcatatttagtcattcgaa |
3083972 |
T |
|
| Q |
108 |
ttcgagaaattgcaatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaaaatttagcaaatttaagagatatcttggtgaaggaactaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3083971 |
ttcgagaaattgcaatttagtctcttaaaatgaaccgttagtcaatttaatcattgttaaaatttagcaaatttaagagatatcttggtgaaggaactaa |
3083872 |
T |
|
| Q |
208 |
attattgactttctttattttaagagactaacttactattttgcaaatttgaaaaactaaatttctggactcttataatatggaagaatggaatattcat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3083871 |
attattgactttctttattttaagagactaacttactattttgcaaatttgaaaaactaaatttctggactcttataatatggaagaatggaatattcat |
3083772 |
T |
|
| Q |
308 |
ttactagtaaaagaatgcacattgcttatttt |
339 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3083771 |
ttactagtaaaagaatgcacattgcttatttt |
3083740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 3092196 - 3092163
Alignment:
| Q |
299 |
aatattcatttactagtaaaagaatgcacattgc |
332 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |
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|
| T |
3092196 |
aatattcatttgctagtaaaagaatgcacattgc |
3092163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 41590839 - 41590799
Alignment:
| Q |
230 |
agagactaacttactattttgcaaatttgaaaaactaaatt |
270 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
41590839 |
agagactaaattactattttgcaaatttgaaaaactgaatt |
41590799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 41513868 - 41513824
Alignment:
| Q |
226 |
tttaagagactaacttactattttgcaaatttgaaaaactaaatt |
270 |
Q |
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|||||| ||||||||| |||||||||||||||||| |||||||| |
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| T |
41513868 |
tttaagggactaacttgctattttgcaaatttgaaggactaaatt |
41513824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 40213407 - 40213451
Alignment:
| Q |
226 |
tttaagagactaacttactattttgcaaatttgaaaaactaaatt |
270 |
Q |
| |
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||||||||||||| |||| ||||||||||||| || ||||||||| |
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|
| T |
40213407 |
tttaagagactaaattacaattttgcaaatttaaataactaaatt |
40213451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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