View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0839-INSERTION-2 (Length: 308)
Name: NF0839-INSERTION-2
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839-INSERTION-2 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 30440882 - 30440600
Alignment:
| Q |
8 |
tcttcatcgtcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagactgaacatattcatctcacatcaaatccagatct |
107 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
30440882 |
tcttcatcgtcattgcctctagctccagccaccttacgtaaaccaccacaagactgtgagttgagaatgaacatattcatctcacatcaaatccagatct |
30440783 |
T |
|
| Q |
108 |
caaaatcctctacatctcgatttgttggttttaacccatgagaatacattgattttgttgacctaattccattttcccaggtattcaatttgttgtatgc |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30440782 |
caaaatcctctacatctagatttgttggttttaacccatgaaaattcattgattttgctgacctaattccattttcccaggtattcaatttgttgtatgc |
30440683 |
T |
|
| Q |
208 |
taatttgctaattttagaattaaatatctaggtttaattatgtttatatgatttaacgttaaattatgtgaattttgtatttt |
290 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
30440682 |
taatttgtgaattttagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattttgtatttt |
30440600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 37719669 - 37719392
Alignment:
| Q |
8 |
tcttcatcgtcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagactgaacatattcat------ctcacatcaaatcc |
101 |
Q |
| |
|
|||||||| |||||| ||| |||||| |||| ||||| ||||||||||| |||| |||||||||| ||||||||||||| ||| |||||||||| |
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| T |
37719669 |
tcttcatcctcatcgactcaagctccggccatcttccataaaccaccacgagaccgtgagtcgagagtgaacatattcatattcatctcgcatcaaatcc |
37719570 |
T |
|
| Q |
102 |
agatctcaaaatcctctacatctcgatttgttggttttaacccatgagaatacattgattttgttgacctaattccattttcccaggtatt--------- |
192 |
Q |
| |
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||||||| ||||||||| ||||||||| |||||||||||| |||||| || |||||||||||| |||||||||| ||||| ||||||||| |
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| T |
37719569 |
agatctcgaaatcctctgcatctcgatctgttggttttaa-ccatgaaaaaacattgattttgctgacctaatttcatttctccaggtattcaatctatc |
37719471 |
T |
|
| Q |
193 |
-caatttgttgtatgctaatttgctaattttagaattaaatatctaggtttaattatgtttatatgatttaacgttaaa |
270 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||||||||||||||| |
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|
| T |
37719470 |
ccaatctgatgtatgctaatttgctaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaa |
37719392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 16961299 - 16961003
Alignment:
| Q |
10 |
ttcatcgtcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagactgaacatattcat------ctcacatcaaatccag |
103 |
Q |
| |
|
|||||| |||||| ||| |||||| |||||||||||||||||||||| |||| ||||||||||| ||||||||||||| ||| |||||||||||| |
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|
| T |
16961299 |
ttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccatgagtcgagagtgaacatattcatattcatctcgcatcaaatccag |
16961200 |
T |
|
| Q |
104 |
atctcaaaatcctctacatctcgatttgttggttttaacccatgagaatacattgattttgttgacctaattccattttcccaggtatt----------c |
193 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||||||| | |
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| T |
16961199 |
atctcaaaatcctctgcatctcgatttgttggttttaacccatgaaaaaacattgattttgctgacctaattccatttctccaggtattcaatctatcac |
16961100 |
T |
|
| Q |
194 |
aatttgttgtatgctaatttgctaattttagaattaaatatctaggtttaattatgtttatatgatttaacgttaaattatgtgaattttgtatttt |
290 |
Q |
| |
|
||| || |||||||||||||| ||||||||||||||||||| | |||||| |||||||||| | |||||||||||||||| |||||||||||||||| |
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|
| T |
16961099 |
aatctgatgtatgctaatttgttaattttagaattaaatatttgggtttatttatgtttatttaatttaacgttaaattaagtgaattttgtatttt |
16961003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 25868608 - 25868906
Alignment:
| Q |
8 |
tcttcatcgtcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagactgaacata------ttcatctcacatcaaatcc |
101 |
Q |
| |
|
|||||||| |||||| ||| |||||| |||||||||||||||||||||| |||| |||||||||| ||||||| |||||||| |||||||||| |
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|
| T |
25868608 |
tcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagagaacatattcatattcatctcgcatcaaatcc |
25868707 |
T |
|
| Q |
102 |
agatctcaaaatcctctacatctcgatttgttggttttaacccatgagaatacattgattttgttgacctaattccattttcccaggtatt--------- |
192 |
Q |
| |
|
||||||| ||||||||| |||||| || ||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||||||| |
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| T |
25868708 |
agatctcgaaatcctctgcatctcaatatgttggttttaacccatgaaaaaacattgattttgctgacctaattccatttatccaggtattcaatctatc |
25868807 |
T |
|
| Q |
193 |
-caatttgttgtatgctaatttgctaattttagaattaaatatctaggtttaattatgtttatatgatttaacgttaaattatgtgaattttgtatttt |
290 |
Q |
| |
|
|||| || ||||||||||||| ||||||||||||||||||||| |||||| ||| |||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
25868808 |
ccaatctgatgtatgctaatttattaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaagtgaattttgtatttt |
25868906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 4435410 - 4435708
Alignment:
| Q |
8 |
tcttcatcgtcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagactgaacata------ttcatctcacatcaaatcc |
101 |
Q |
| |
|
|||||||| |||||| ||| |||||| |||||||||||||||||||||| |||| |||||||||| |||||||| |||||||| |||||||||| |
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|
| T |
4435410 |
tcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcatattcatctcgcatcaaatcc |
4435509 |
T |
|
| Q |
102 |
agatctcaaaatcctctacatctcgatttgttggttttaacccatgagaatacattgattttgttgacctaattccattttcccaggtatt--------- |
192 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||| |
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|
| T |
4435510 |
agatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttctccaggtattcaatctatc |
4435609 |
T |
|
| Q |
193 |
-caatttgttgtatgctaatttgctaattttagaattaaatatctaggtttaattatgtttatatgatttaacgttaaattatgtgaattttgtatttt |
290 |
Q |
| |
|
|||| || |||||||||||||| ||||||||||||||||||||| |||||| ||| |||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
4435610 |
ccaatctgatgtatgctaatttgttaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaagtgaattttgtatttt |
4435708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 4091840 - 4091929
Alignment:
| Q |
201 |
tgtatgctaatttgctaattttagaattaaatatctaggtttaattatgtttatatgatttaacgttaaattatgtgaattttgtatttt |
290 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
4091840 |
tgtatgctaatttgttaatttcagaattaaatatctgggtttatttatgtttatttgatttaacgttaaattaagtgaattttgtatttt |
4091929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 46595428 - 46595130
Alignment:
| Q |
8 |
tcttcatcgtcatcgcctctagctccagccaccttccgtaaaccaccacaagactatgagtcgagactgaacatattcat------ctcacatcaaatcc |
101 |
Q |
| |
|
|||||||| |||||| ||| |||||| |||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
46595428 |
tcttcatcctcatcgactcaagctccggccaccttccgtaaaccaccacgagaccgtgagtcgagagtgaacatattcatattcatctcgcatcaaatcc |
46595329 |
T |
|
| Q |
102 |
agatctcaaaatcctctacatctcgatttgttggttttaacccatgagaatacattgattttgttgacctaattccattttcccaggtatt--------- |
192 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
46595328 |
agatctcgaaatcctctgcatctcgatctgttggttttaacccatgaaaatacattgattttgctgacctaatttcatttctccaggtattcaatctatc |
46595229 |
T |
|
| Q |
193 |
-caatttgttgtatgctaatttgctaattttagaattaaatatctaggtttaattatgtttatatgatttaacgttaaattatgtgaattttgtatttt |
290 |
Q |
| |
|
|||| || |||||||||||||| ||||||||||||||||||||| |||||| ||| |||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
46595228 |
ccaatctgatgtatgctaatttgttaattttagaattaaatatctgggtttatttaagtttatttgatttaacgttaaattaagtgaattttgtatttt |
46595130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 38016650 - 38016540
Alignment:
| Q |
86 |
atctcacatcaaatccagatctcaaaatcctctacatctcgatttgttggttttaacccatgagaatacattgattttgttgacctaattccattttccc |
185 |
Q |
| |
|
|||||||||||||| ||||||| |||||| ||| ||||| ||| ||||||||| ||||||| | ||||||||||||||| | |||||||||||||| || |
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|
| T |
38016650 |
atctcacatcaaattcagatcttaaaatcatctgcatcttgatctgttggtttcaacccattaaaatacattgattttgctcacctaattccatttctcc |
38016551 |
T |
|
| Q |
186 |
aggtattcaat |
196 |
Q |
| |
|
||||||||||| |
|
|
| T |
38016550 |
aggtattcaat |
38016540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 290
Target Start/End: Original strand, 47521093 - 47521191
Alignment:
| Q |
192 |
tcaatttgttgtatgctaatttgctaattttagaattaaatatctaggtttaattatgtttatatgatttaacgttaaattatgtgaattttgtatttt |
290 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||| |||||| | |||||| |||||| || |||||||||||||||||| |||||||||||||||| |
|
|
| T |
47521093 |
tcaatctgatgtatgctaatttgttaattttagaatcaaatatatgggtttatatatgttcatttgatttaacgttaaattaagtgaattttgtatttt |
47521191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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