View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839-INSERTION-3 (Length: 564)
Name: NF0839-INSERTION-3
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839-INSERTION-3 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 8 - 561
Target Start/End: Complemental strand, 44145227 - 44144666
Alignment:
| Q |
8 |
acaaggaaggaagagattacactatctcctctgatggctgaatctctggccttgatatggtgtttgcaatgggttcagatgcaagatttccacaatttga |
107 |
Q |
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| T |
44145227 |
acaaggaaggaagatattacactatctcctctgatggttgaatccctagccttgatatggtgtttgcaacgggtttagatgcaagatttccacaatttga |
44145128 |
T |
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| Q |
108 |
tcattgactcagacgcagaaactttaacacacggcttgggtagccaggtgaaagcatgctgacattgaccatataattctggactgtaaagaaatactgc |
207 |
Q |
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| T |
44145127 |
tcattgactcagacgcagaaactttaacacacggcttgggtagccaggtgaaagcatgctgacattgaccatataattctggactgtaaagaaatactgc |
44145028 |
T |
|
| Q |
208 |
agcacatgaattctaggactttggttttaaaatggtccagaccttgccatgaattgcatttgttatgacttattatgtctctaatgaaaatcttgttttc |
307 |
Q |
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| T |
44145027 |
agcacatgaattctaggactttggttgtaaaatggtccagaccttgccatgaattgcatttgttatgacttattatttctctaatgaaaatcttattttc |
44144928 |
T |
|
| Q |
308 |
atgtcaaaaagaataaaataatcctcctattcgaagcttgcaagtgagtctaaatttgatggcattttttgactataaaacacctgatattatagttgtt |
407 |
Q |
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| T |
44144927 |
atgtcaaaaaaattaaaataatcctcctattcgaaacttgcaagtgagtctaaatttgattgcattttttgacaataaaacacctgatattatatttgtt |
44144828 |
T |
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| Q |
408 |
tatttacga----ttattgttttatagaaacatgtctaagatagtatgctttctaagaataccatgtcagcattggtttttaattttactaatc-acaat |
502 |
Q |
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| T |
44144827 |
tatttacgattttttttttttttattgaaacatgtctaagatagtatgctttctaagaataccatgtcagcattgttttttaattttactaatcaacaat |
44144728 |
T |
|
| Q |
503 |
aggttcagtattatcttgccctttt---aagtgtacactaccaccactttactcttctattt |
561 |
Q |
| |
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| T |
44144727 |
agattcagtattatcttaccctttttgaaggtgtacactaccaccaccttactcttgtattt |
44144666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 44158235 - 44158411
Alignment:
| Q |
30 |
tatctcctctgatggctgaatctctggccttgatatggtgtttgcaatgggttcagatgcaagatttccacaatttgatcattgactcagacgcagaaac |
129 |
Q |
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|||||||| ||||||||||| | |||||||||| | ||||||||||| |||||| ||| | || ||||||||||||||||| | || | |||| |
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| T |
44158235 |
tatctcctttgatggctgaagcactggccttgacacggtgtttgcaacatgttcagcaacaaaaatttcacaatttgatcattgagacggatgttgaaat |
44158334 |
T |
|
| Q |
130 |
tttaacacacggcttgggtagccaggtgaaagcatgctgacattgaccatata--attctggactgtaaagaaatact |
205 |
Q |
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| ||| |||| |||| ||| | || ||| ||||||||||||||||| ||| || |||||||||| ||| |||||||| |
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| T |
44158335 |
tgtaaaacactgctttggtggacaagtg-aagcatgctgacattgatcatttaatattctggactttaaggaaatact |
44158411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 40893439 - 40893411
Alignment:
| Q |
200 |
aatactgcagcacatgaattctaggactt |
228 |
Q |
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| T |
40893439 |
aatactgcagcacatgaattctaggactt |
40893411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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