View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839-INSERTION-4 (Length: 459)
Name: NF0839-INSERTION-4
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839-INSERTION-4 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 276
Target Start/End: Complemental strand, 34447788 - 34447517
Alignment:
| Q |
6 |
caattgcttcatactcctctcacattatttatcaaatccatcttcctaaggtgagtagaatacaatgattaataacatgatgttgagtttgactctcaac |
105 |
Q |
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| T |
34447788 |
caattgcttcatactccgctcacattatttatcaaatccatcttcctaaggtgagtaaaatacaatgattaataacatgatgttgagtttgactctcaac |
34447689 |
T |
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| Q |
106 |
ttacgaaattttagtcaatattctgctttaggtaactgcttctattacagctgtttgttagttgattttggctataagtagtttgttgcatagccttgct |
205 |
Q |
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| T |
34447688 |
ttacgaaattttagtcaatattctgctttaggtaactgcttctattacagctgtttgttagttgattttggctataagtagtttgttgcatagccttgct |
34447589 |
T |
|
| Q |
206 |
ttgtaacataattctattcatttctatatcaattgcatctt-aaaccagattttgtataatgtaatttctgg |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
34447588 |
ttgtaacataattctattcatttctatatcaattgcattttaaaaccagattttgtataatgtaatttctgg |
34447517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 303 - 454
Target Start/End: Complemental strand, 34447518 - 34447363
Alignment:
| Q |
303 |
ggctgccggaa-tttcagttggccaca-gac-gccaaaaagttttgccggaaatccagaacattcttgtagagtaagctctttggcttgaagg-actgaa |
398 |
Q |
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||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34447518 |
ggctgccggaaatttcagttggccacaagaccgccaaaaagttttgccggaaatccagaacattcttgtagagtaagctctttggcttgaaggaactgaa |
34447419 |
T |
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| Q |
399 |
gtcgcgtgatatggttatgactccattgtgatgatcaaagcgcaattcatctttca |
454 |
Q |
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| T |
34447418 |
gtcgcgtgatatggttatgactccattgtgataatcaaagcgcaattcatctttca |
34447363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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