View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0839-INSERTION-5 (Length: 562)

Name: NF0839-INSERTION-5
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0839-INSERTION-5
NF0839-INSERTION-5
[»] chr3 (2 HSPs)
chr3 (8-455)||(46360373-46360832)
chr3 (120-167)||(30122036-30122083)
[»] chr4 (2 HSPs)
chr4 (120-167)||(23673437-23673484)
chr4 (120-172)||(52840280-52840332)
[»] chr2 (2 HSPs)
chr2 (120-167)||(41517445-41517492)
chr2 (120-169)||(472424-472473)
[»] chr6 (1 HSPs)
chr6 (110-167)||(24252962-24253019)
[»] chr7 (2 HSPs)
chr7 (115-167)||(2399781-2399833)
chr7 (129-174)||(23097575-23097620)
[»] chr1 (1 HSPs)
chr1 (120-169)||(5700113-5700162)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 8 - 455
Target Start/End: Original strand, 46360373 - 46360832
Alignment:
Q  8 cgcgggctatgagcaa-taaagacaaaatatatcggtggatttaatttatggaaa-tgataactattgtctatgagcactttttaagacattaa-tagta 104  Q
    |||||||||||||||| ||||| |||||||||| | ||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||| |||||    
T  46360373 cgcgggctatgagcaaataaaggcaaaatatattg-tggatttaatttatggaaaatgataacgattgtctatgagcattttttaagaccttaaatagta 46360471  T
Q  105 ttttatctgatcatgtttataagcaaaatataactttttaagcatattgaataattaatgtatttaactttttatgagcaaataaatgtgattggaggga 204  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||    ||  |||||||||| ||||||||    
T  46360472 ttttatctggtcacgtttataagcaaaatataattttttaagcatattgaataattaatatatctaacttttt----gcttataaatgtgactggaggga 46360567  T
Q  205 gtaagtttttatgaa-ttttatataatcagtgcattgtgaatatttgtctttttt-aatagtaattacctaatttataatgctt--agagtgtctgagaa 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||    
T  46360568 gtaagtttttatgaaattttatataatcagtgcattgtgaatatttgtcttttttaaatagtaattacctaatttataatgcttaaagagtgtctgagaa 46360667  T
Q  301 cactcgttatc-aaacccttaatttattaataattaatcacatgt-aactaattaatgaataa-gagttaatttgctgcat-aatatcattctcttag-a 395  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||||| |    
T  46360668 cactcgttatcaaaacccttaatctattaataattaatcacatgtaaactaattaatgaataaggagttaatttgctccataaatatcattctcttagaa 46360767  T
Q  396 tgtctataaactaatg-aaataca-tcatttagtttt--aactatcatg-aagacaaccaatttc 455  Q
    |||||||||||||||| ||||||| | ||||||||||  |||||||||| |||||||||||||||    
T  46360768 tgtctataaactaatgaaaatacattaatttagtttttaaactatcatgaaagacaaccaatttc 46360832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 30122083 - 30122036
Alignment:
Q  120 tttataagcaaaatataactttttaagcatattgaataattaatgtat 167  Q
    ||||||||||||| |||| |||||| | ||||||||||||||||||||    
T  30122083 tttataagcaaaaaataattttttaggtatattgaataattaatgtat 30122036  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 23673484 - 23673437
Alignment:
Q  120 tttataagcaaaatataactttttaagcatattgaataattaatgtat 167  Q
    ||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  23673484 tttataagcaaaaaataactttttaggtatattgaataattaatgtat 23673437  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 52840280 - 52840332
Alignment:
Q  120 tttataagcaaaatataactttttaagcatattgaataattaatgtatttaac 172  Q
    ||||||||||||| |||| |||||||| | ||| |||||||||||||| ||||    
T  52840280 tttataagcaaaaaataattttttaagtacattaaataattaatgtatctaac 52840332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 41517492 - 41517445
Alignment:
Q  120 tttataagcaaaatataactttttaagcatattgaataattaatgtat 167  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  41517492 tttataagcaaaaaataactttttaagtacattgaataattaatgtat 41517445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 472424 - 472473
Alignment:
Q  120 tttataagcaaaatataactttttaagcatattgaataattaatgtattt 169  Q
    ||||||| ||||||||||||||||| |  |||||||||| ||||||||||    
T  472424 tttataaacaaaatataactttttaggtttattgaataactaatgtattt 472473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 24253019 - 24252962
Alignment:
Q  110 tctgatcatgtttataagcaaaatataactttttaagcatattgaataattaatgtat 167  Q
    |||| |||| ||||||||||||| ||||||||||| | | ||||||||||||||||||    
T  24253019 tctggtcatatttataagcaaaaaataactttttaggtacattgaataattaatgtat 24252962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 2399833 - 2399781
Alignment:
Q  115 tcatgtttataagcaaaatataactttttaagcatattgaataattaatgtat 167  Q
    |||| |||||||  |||| ||||||||||||| ||||||||||||||||||||    
T  2399833 tcatatttataaataaaaaataactttttaagtatattgaataattaatgtat 2399781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 23097620 - 23097575
Alignment:
Q  129 aaaatataactttttaagcatattgaataattaatgtatttaactt 174  Q
    |||| ||||||||||| | | |||||||||||||||||||||||||    
T  23097620 aaaaaataactttttaggtagattgaataattaatgtatttaactt 23097575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 5700162 - 5700113
Alignment:
Q  120 tttataagcaaaatataactttttaagcatattgaataattaatgtattt 169  Q
    ||||||||||||| | ||||||||||| | ||||||||||||||| ||||    
T  5700162 tttataagcaaaaaacaactttttaagtacattgaataattaatgcattt 5700113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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