View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_high_10 (Length: 430)
Name: NF0839_high_10
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 29 - 420
Target Start/End: Original strand, 4664934 - 4665325
Alignment:
| Q |
29 |
agaatcctcatgcaagaataatgtatgctgactattttggtgcagcaatgcgtttcttccattcaccaagacaatatggttagtttatttccatggtttt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
4664934 |
agaatcctcatgcaagaataatgtatgctgactattttggtgcagcaatgcgtttcttccattcaccaagacaatatggttagtttattttcatggcttt |
4665033 |
T |
|
| Q |
129 |
atctaatgtgtataaacaaaccggtactgtattatgcacaaacttattttacaccatttgattactaaatctcgtcatatttcttttgtctttcttttcc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4665034 |
atctaatgtgtataaacaaaccggtactgtattatgcacaaacttattttacaccatttgattacttaatctcgtcatatttcttttgtctttcttttcc |
4665133 |
T |
|
| Q |
229 |
cgttcctattcaatatgacaatgcaaaattatatggtatcacttctttttcaggaatgatttgtataacttgttaaaagctaccaaagaaaatttgacgt |
328 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4665134 |
cgttcctattcaatatggcaatgcaaaattatatggtatcacttctttttcaggaatgatttgtataacttgttaaaagctaccaaaaaaaatttgacgt |
4665233 |
T |
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| Q |
329 |
caaaacttgcttaaagctaccaaagtgtttcacgagaaaaatttgatcttaatttagtctctaattcagcaaacaaaaatttagtgtctctg |
420 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4665234 |
caaaacttgcttaaagctaccaaagtgtttcacgaaaaaaatttgatcttaatttagtctctaatacagcaaacaaaaatttagtgtctctg |
4665325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 4668102 - 4668218
Alignment:
| Q |
29 |
agaatcctcatgcaagaataatgtatgctgactattttggtgcagcaatgcgtttcttccattcaccaagacaatatggttagtttatttccatggtttt |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| ||| ||| |
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| T |
4668102 |
agaatcctcatgcaagaataatgtatgctgactattttggtgcagcaaagcgtttcttccattcaccaagacactacggttagtttatttccgtggcttt |
4668201 |
T |
|
| Q |
129 |
atctaatgtgtataaac |
145 |
Q |
| |
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||||||||| |||||| |
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|
| T |
4668202 |
gtctaatgtgcataaac |
4668218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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