View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0839_high_2 (Length: 702)

Name: NF0839_high_2
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0839_high_2
NF0839_high_2
[»] chr5 (23 HSPs)
chr5 (13-473)||(1163360-1163817)
chr5 (13-473)||(3299487-3299965)
chr5 (13-473)||(3392380-3392858)
chr5 (13-396)||(1849919-1850287)
chr5 (13-144)||(39879768-39879899)
chr5 (13-144)||(40418237-40418368)
chr5 (13-144)||(38987659-38987790)
chr5 (13-144)||(39726372-39726503)
chr5 (562-672)||(1163145-1163252)
chr5 (157-458)||(40418417-40418712)
chr5 (13-153)||(39399813-39399953)
chr5 (13-144)||(39168800-39168931)
chr5 (194-464)||(38987873-38988140)
chr5 (194-464)||(39726592-39726863)
chr5 (194-441)||(39879988-39880232)
chr5 (574-654)||(40418870-40418950)
chr5 (212-269)||(39169041-39169098)
chr5 (531-563)||(1163270-1163302)
chr5 (574-618)||(38988292-38988336)
chr5 (586-654)||(39880427-39880495)
chr5 (36-137)||(40102213-40102314)
chr5 (597-654)||(3300086-3300147)
chr5 (597-654)||(3392979-3393040)
[»] chr4 (7 HSPs)
chr4 (13-143)||(25912292-25912422)
chr4 (157-277)||(25912122-25912239)
chr4 (71-137)||(44444772-44444838)
chr4 (357-464)||(25911942-25912046)
chr4 (353-464)||(44444435-44444543)
chr4 (574-654)||(25911695-25911775)
chr4 (103-137)||(43996488-43996522)


Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 473
Target Start/End: Complemental strand, 1163817 - 1163360
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcg-cacaacttttcaaatcaagactcatcttggtcgtattttaaaac 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||| ||||||||||||||||||||||||||    
T  1163817 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 1163719  T
Q  112 ctggtgaccatgctcttggttatgacctgtctgctggaggaggtcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcc 211  Q
    | ||||||||||||||||||||||||||| |||    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163718 ccggtgaccatgctcttggttatgacctgcctga---aggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcc 1163622  T
Q  212 tgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaagagcaatctaccgaaatcca 311  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1163621 tgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatcca 1163522  T
Q  312 accaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgatgatctacttacaagc 411  Q
    ||| ||||||||||||||||||||| | |||||||||| |||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1163521 acctactgccatccatctggcccactcttcagatcccccttttatagacctttttttccattggaggatttgcttgatggatgatgatctacttacaagc 1163422  T
Q  412 ttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaaggaagatgc 473  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1163421 ttaaacaaacatcacttctattgatgttttgttacttccaataacaaaaacaaggaagatgc 1163360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 13 - 473
Target Start/End: Original strand, 3299487 - 3299965
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataat---cgcacaacttttcaaatcaagactcatcttggtcgtattttaaa 109  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||    
T  3299487 aatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaa 3299586  T
Q  110 acctggtgaccatgctcttggttatgacctgtctgctggaggagg------------------tcccattttgattaccaagattagttttgctaaagag 191  Q
    ||| |||||||||||||||||||||||||||||| |||||||||                   | |||||||||| ||||| ||||||| |||  |||||    
T  3299587 acccggtgaccatgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaaaattagttatgccgaagag 3299686  T
Q  192 gagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaa 291  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  3299687 gagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaa 3299786  T
Q  292 gagcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatgg 391  Q
    |||||||||||||||||| ||||||||||||||||| || | || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||     
T  3299787 gagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatg- 3299885  T
Q  392 atgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaaggaagatgc 473  Q
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  3299886 --gatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 3299965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 13 - 473
Target Start/End: Original strand, 3392380 - 3392858
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataat---cgcacaacttttcaaatcaagactcatcttggtcgtattttaaa 109  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||    
T  3392380 aatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaa 3392479  T
Q  110 acctggtgaccatgctcttggttatgacctgtctgctggaggagg------------------tcccattttgattaccaagattagttttgctaaagag 191  Q
    ||| |||||||||||||||||||||||||||||| |||||||||                   | |||||||||| ||||| ||||||| |||  |||||    
T  3392480 acccggtgaccatgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaaaattagttatgccgaagag 3392579  T
Q  192 gagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaa 291  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  3392580 gagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaa 3392679  T
Q  292 gagcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatgg 391  Q
    |||||||||||||||||| ||||||||||||||||| || | || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||     
T  3392680 gagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatg- 3392778  T
Q  392 atgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaaggaagatgc 473  Q
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  3392779 --gatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 3392858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 396
Target Start/End: Original strand, 1849919 - 1850287
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataat---cgcacaacttttcaaatcaagactcatcttggtcgtattttaaa 109  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||   | ||||||||||||||||| |||||||||| |||||||||||||    
T  1849919 aatatcgtttagctaatgccatagttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatcttagtcgtattttaaa 1850018  T
Q  110 acctggtgaccatgctcttggttatgacctgtctgctggaggaggtcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgtt 209  Q
    ||||||||||||||||||||||||||||||| |||    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1850019 acctggtgaccatgctcttggttatgacctgcctga---aggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttatt 1850115  T
Q  210 cctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaagagcaatctaccgaaatc 309  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||               |||||||||    
T  1850116 cctgttcaggataagtgggaatctgattatcaactcttcttaaaagatttacaacaagaccctaaactcctcttcg---------------accgaaatc 1850200  T
Q  310 caaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgat 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850201 caaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgat 1850287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 39879768 - 39879899
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 112  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  39879768 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattttaaaacc 39879867  T
Q  113 tggtgaccatgctcttggttatgacctgtctg 144  Q
     |||||||||||||||||||||||||||||||    
T  39879868 cggtgaccatgctcttggttatgacctgtctg 39879899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 40418237 - 40418368
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 112  Q
    ||||| |||||||| ||||  | ||||||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  40418237 aatattgtttagctgatgctgtggttgctcgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattttaaaacc 40418336  T
Q  113 tggtgaccatgctcttggttatgacctgtctg 144  Q
     |||||||||||||||||||||||||||||||    
T  40418337 cggtgaccatgctcttggttatgacctgtctg 40418368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 38987659 - 38987790
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 112  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| ||||||||||  ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  38987659 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgtatcttaaaacc 38987758  T
Q  113 tggtgaccatgctcttggttatgacctgtctg 144  Q
     |||||||||||||||||||||||||||||||    
T  38987759 cggtgaccatgctcttggttatgacctgtctg 38987790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 39726372 - 39726503
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 112  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| ||||||||||  ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  39726372 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgtatcttaaaacc 39726471  T
Q  113 tggtgaccatgctcttggttatgacctgtctg 144  Q
     |||||||||||||||||||||||||||||||    
T  39726472 cggtgaccatgctcttggttatgacctgtctg 39726503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 562 - 672
Target Start/End: Complemental strand, 1163252 - 1163145
Alignment:
Q  562 tttatgtttatcagaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccatttactactt 661  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||   |||||    
T  1163252 tttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatattcggcatataaagttcctttcaccatt---tactt 1163156  T
Q  662 tcctgtcttcc 672  Q
    |||||||||||    
T  1163155 tcctgtcttcc 1163145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 157 - 458
Target Start/End: Original strand, 40418417 - 40418712
Alignment:
Q  157 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaaga 256  Q
    |||||||||| ||||||||||||| |||  |||||   ||||||||||||||| || |||| ||||||||||||||||||||||||| |||||| || ||    
T  40418417 ccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctcttcatgataagtgggaatctgattatcaactcttcttcaatga 40418513  T
Q  257 tttacaacaagaccctaaactcctcttcgaccgaagagcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttaga 356  Q
    | ||||||||||| |||||||||||||| ||  |||||||  ||||||| ||| ||||||  || |  ||| ||     ||| ||  |  |||   ||      
T  40418514 tctacaacaagacactaaactcctcttcaacgtaagagcagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcgtaatcccccctacc 40418613  T
Q  357 agacctttttatccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataac 456  Q
    |||||||||  |||||||||||| |||||||| |||||||   ||| |||| |||||||||||| ||||||| |||| ||||||||||  ||||||||||    
T  40418614 agaccttttgttccattggaggacttgcttgacggatgat---ctagttactagcttaaacaaaaatcacttttgttaatgttttgtttgttccaataac 40418710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 39399813 - 39399953
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 112  Q
    |||| ||||||||| ||||| | |||||||||||  || || |||||||||||  ||||||||||||||||| |||||||||||||| |||||||||| |    
T  39399813 aataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatgacacaacttttcaaatcaggactcatcttggtcatattttaaaatc 39399912  T
Q  113 tggtgaccatgctcttggttatgacctgtctgctggaggag 153  Q
     |||||| ||||||||||||||||| ||||||  |||||||    
T  39399913 cggtgactatgctcttggttatgacttgtctggaggaggag 39399953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 39168800 - 39168931
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 112  Q
    ||||||| |||||| ||||| | |||||||||||  ||||| |||||||||||  |||||||||||||||||| |||||||| |||| |||||||||| |    
T  39168800 aatatcggttagctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatc 39168899  T
Q  113 tggtgaccatgctcttggttatgacctgtctg 144  Q
     |||||| ||||||||||||||||| ||||||    
T  39168900 cggtgactatgctcttggttatgacttgtctg 39168931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 194 - 464
Target Start/End: Original strand, 38987873 - 38988140
Alignment:
Q  194 gaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaaga 293  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||| || ||| |||||||||||||| |||| |||||| |   || |    
T  38987873 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataaca 38987972  T
Q  294 gcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggat 393  Q
    |||  |||||||||||||| ||||  | |  ||| || |   ||| ||  |  |||   ||  ||||||||| ||||||||||||| |||||||| |       
T  38987973 gcagcctaccgaaatccaaacaaccactacacatatgacgggcccttcgtagacccccctaccagaccttttgatccattggaggacttgcttgacg--- 38988069  T
Q  394 gatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaa 464  Q
    ||||||||| | || |||||||||||| ||||||| |||||||||||||||  |||||||||||| |||||    
T  38988070 gatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataacaacaacaa 38988140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 194 - 464
Target Start/End: Original strand, 39726592 - 39726863
Alignment:
Q  194 gaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaaga 293  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||| || ||| |||||||||||||| |||| |||||| |   || |    
T  39726592 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataaca 39726691  T
Q  294 gcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggat 393  Q
    |||  |||||||||||||| ||||  | |  ||| || |   ||| ||  |  |||   ||  ||||||||| ||||||||||||| |||||||| ||||    
T  39726692 gcaccctaccgaaatccaaacaaccactacacatatgacgggcccttcgtagacccccctatcagaccttttgatccattggaggacttgcttgacggat 39726791  T
Q  394 gat-gatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaa 464  Q
    |||  | ||| |||| |||||||||||| ||||| | |||||||||||||||  ||||||||| || |||||    
T  39726792 gatctagctagttactagcttaaacaaaaatcacctttgttgatgttttgtttgttccaataataacaacaa 39726863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 194 - 441
Target Start/End: Original strand, 39879988 - 39880232
Alignment:
Q  194 gaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaaga 293  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||| || ||| |||||||| || |||||||| |||||  |  ||||    
T  39879988 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaaaacactaaactcatcttcagcgtaaga 39880087  T
Q  294 gcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggat 393  Q
    |||  ||||||| ||| ||||||  || |  ||| ||     ||| |||||  |||   ||  |||||||||| |||||||||||| |||||||| |       
T  39880088 gcagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcagaatcccccctaccagacctttttttccattggaggacttgcttgacg--- 39880184  T
Q  394 gatgatctacttacaagcttaaacaaacatcacttctgttgatgtttt 441  Q
    ||||||||| |||| |||||||||||| ||||||| ||||||||||||    
T  39880185 gatgatctagttactagcttaaacaaaaatcacttttgttgatgtttt 39880232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 574 - 654
Target Start/End: Original strand, 40418870 - 40418950
Alignment:
Q  574 agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccattt 654  Q
    ||||||||||| ||||||| ||||||||||  |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  40418870 agaacaagttacgtgtgttgatcgtgcttcacaaaccatgcctgtcattatattcggcataaaaagttcctttcaccattt 40418950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 39169041 - 39169098
Alignment:
Q  212 tgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagac 269  Q
    |||| ||| ||||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  39169041 tgttgagggtaagtgggaatctgattatcaactctttttaaaagatctacaacaagac 39169098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 531 - 563
Target Start/End: Complemental strand, 1163302 - 1163270
Alignment:
Q  531 cgataacaagaacaacttactttgttgcaattt 563  Q
    |||||||||||||||||||||||||||||||||    
T  1163302 cgataacaagaacaacttactttgttgcaattt 1163270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 618
Target Start/End: Original strand, 38988292 - 38988336
Alignment:
Q  574 agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgt 618  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||    
T  38988292 agaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgt 38988336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 654
Target Start/End: Original strand, 39880427 - 39880495
Alignment:
Q  586 gtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccattt 654  Q
    ||||||| ||| ||||||| ||| |||| |||||| |||||| |||||| |||||| ||||||||||||    
T  39880427 gtgtgttgatcttgcttcccaaaacatgtctgtcaatatattcggcataaaaagttactttcaccattt 39880495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 40102314 - 40102213
Alignment:
Q  36 gttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgaccatgctcttggttatg 135  Q
    ||||||||||| |||||| ||||||| |||  ||| |  ||| | |||||||||||||| |||  | |||| |||  ||||||||||||| |||||||||    
T  40102314 gttgctcgtgtgaaagattttggaaagaatgacacgagatttaatatcaagactcatctgggttatcttttgaaatttggtgaccatgcttttggttatg 40102215  T
Q  136 ac 137  Q
    ||    
T  40102214 ac 40102213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 597 - 654
Target Start/End: Original strand, 3300086 - 3300147
Alignment:
Q  597 gtgcttccgaaaccatgcctgtcatta----tatttggcatataaagttcctttcaccattt 654  Q
    |||||||| ||||||||| ||||||||    |||| |||||||||||| |||||||||||||    
T  3300086 gtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccattt 3300147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 597 - 654
Target Start/End: Original strand, 3392979 - 3393040
Alignment:
Q  597 gtgcttccgaaaccatgcctgtcatta----tatttggcatataaagttcctttcaccattt 654  Q
    |||||||| ||||||||| ||||||||    |||| |||||||||||| |||||||||||||    
T  3392979 gtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcaccattt 3393040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 25912422 - 25912292
Alignment:
Q  13 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 112  Q
    |||||||||||||| |||   | ||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||| |||||||    
T  25912422 aatatcgtttagctgatgatgtggttgctcgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattctaaaacc 25912323  T
Q  113 tggtgaccatgctcttggttatgacctgtct 143  Q
     | ||||||||||||||||||||||||||||    
T  25912322 cgatgaccatgctcttggttatgacctgtct 25912292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 25912239 - 25912122
Alignment:
Q  157 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaaga 256  Q
    |||||||||| ||||||||||||| |||  |||||   ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||  |    
T  25912239 ccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaatta 25912143  T
Q  257 tttacaacaagaccctaaact 277  Q
    | |||| ||||||||||||||    
T  25912142 tctacagcaagaccctaaact 25912122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 44444838 - 44444772
Alignment:
Q  71 aacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgaccatgctcttggttatgac 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44444838 aacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatgac 44444772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 357 - 464
Target Start/End: Complemental strand, 25912046 - 25911942
Alignment:
Q  357 agacctttttatccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataac 456  Q
    |||||||||  |||||||||||| |||||||| |||||||   ||| |||| |||||||||||| ||||||| |||||||||||||||  |||||||||     
T  25912046 agaccttttgttccattggaggacttgcttgacggatgat---ctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataat 25911950  T
Q  457 aaaaacaa 464  Q
    || |||||    
T  25911949 aacaacaa 25911942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 353 - 464
Target Start/End: Complemental strand, 44444543 - 44444435
Alignment:
Q  353 tagaagacctttttatccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaa 452  Q
    ||||||| |||||  |||||| ||||| |||||||| |||||||   ||| ||||||||||||||||| ||||||| |||||||||||||||   |||||    
T  44444543 tagaagatcttttgttccattagaggacttgcttgacggatgat---ctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaa 44444447  T
Q  453 taacaaaaacaa 464  Q
    |||| |||||||    
T  44444446 taacgaaaacaa 44444435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 574 - 654
Target Start/End: Complemental strand, 25911775 - 25911695
Alignment:
Q  574 agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccattt 654  Q
    ||||||||||| ||||||| ||| ||||||| |||||||| ||||||||||||| |||||| ||| |||||||||| ||||    
T  25911775 agaacaagttacgtgtgttgatcatgcttcccaaaccatgtctgtcattatattcggcataaaaaattcctttcactattt 25911695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 137
Target Start/End: Original strand, 43996488 - 43996522
Alignment:
Q  103 ttttaaaacctggtgaccatgctcttggttatgac 137  Q
    ||||||| |||||||||||||||||||||||||||    
T  43996488 ttttaaagcctggtgaccatgctcttggttatgac 43996522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1828 times since January 2019
Visitors: 6150