View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_high_26 (Length: 286)
Name: NF0839_high_26
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 34760544 - 34760798
Alignment:
| Q |
11 |
cataggttcttaagaataataacattagatagggtgagaagtattagattttggtacaccaaatatgaatacttatactatatgttagagtaatactagt |
110 |
Q |
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| T |
34760544 |
cataggttcttaagaataataacattagatagggtgagaagtattagattttggtacaccaaatatgaatacttatactatatgttagagtaatactagt |
34760643 |
T |
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| Q |
111 |
tttctaccgagtaaaccatcaaattcgtctacgactttgtatgacgctctcaaataagttcatgggagcatgaatatttcaaaaggtttattgattctgt |
210 |
Q |
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| T |
34760644 |
tttctactgggtaaaccaccaaattcgtctacgactttgtatgacgctctcaaataagttcatcggagcatgaatatttcaaaaggtttattgattccgt |
34760743 |
T |
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| Q |
211 |
cgaatt---------ttacacatattagttcatgttaggaactacattgatagta |
256 |
Q |
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| T |
34760744 |
cgaattttactcatattactcatattagttcatgttaggaactacattgatagta |
34760798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 34748038 - 34748171
Alignment:
| Q |
12 |
ataggttcttaagaataataacattagatagggtgagaagtattagattttggtacaccaaatatgaatacttat-----actatatgttagagtaatac |
106 |
Q |
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| T |
34748038 |
ataggctcttaagaataatagtattaaatagggtgaagggtattcgattttggttcaccaaatatgagtacttttttattactatattttagagtaatac |
34748137 |
T |
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| Q |
107 |
tagttttctaccgagtaaaccatcaaattcgtct |
140 |
Q |
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| T |
34748138 |
tagttttctagtgagtaaaccaccaaatccgtct |
34748171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 595923 - 595891
Alignment:
| Q |
119 |
gagtaaaccatcaaattcgtctacgactttgta |
151 |
Q |
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| T |
595923 |
gagtaaaccatcaaattcgtctccgactttgta |
595891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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