View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_high_28 (Length: 279)
Name: NF0839_high_28
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_high_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 26174780 - 26175030
Alignment:
| Q |
30 |
ctcagttccctatttgttatgtactatgatagatattagggggtcaagaaaaaatttattcaaccaattcgataccagtatctaattactttgatgaact |
129 |
Q |
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| T |
26174780 |
ctcagttccctatttgttctgtactatgatagatattagagggtcaagaaaaaatttattcaaccaattcgataccagtatctaattactttgatgaact |
26174879 |
T |
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| Q |
130 |
tacatgaaaagttttagagaaatggaccttcatacatatttggttaaatttttatccattggtggtgtc-aatatagaaacaattcatgttccttcaact |
228 |
Q |
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| T |
26174880 |
tacatgaaaagttttagagaaatggaccttcgtacatatttggttaaatttttatccattggtggtgtcaaatatagaaagaattcatgttccttcaact |
26174979 |
T |
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| Q |
229 |
aaaaacttaagcgtaagcaagatataggataataacaattgtagtgtttaa |
279 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26174980 |
aaaaacttaagcttaagcaagatataggataataacaattgtagtgtttaa |
26175030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 26130395 - 26130315
Alignment:
| Q |
197 |
tcaatatagaaacaattcatgttccttcaactaaaaacttaagcgtaagcaagatataggataataacaattgtagtgttta |
278 |
Q |
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| T |
26130395 |
tcaatatagaaacaattcatattccttcga-tcacaacttaagcttaagcaagatataggataataacaactgtcgtgttta |
26130315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 28847106 - 28847039
Alignment:
| Q |
195 |
tgtcaatatagaaacaattcatgttccttcaactaaaaacttaagcgtaagcaagatataggataataa |
263 |
Q |
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| T |
28847106 |
tgtcaatatagaaacaattcatattccttcgact-aaaacttaagcttaagcaaaatataggataataa |
28847039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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