View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_high_31 (Length: 273)
Name: NF0839_high_31
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 48042558 - 48042392
Alignment:
| Q |
70 |
tgaggactaaagcaaaaacattcaaatcagaatgttatcaacattggaaattggaataccatatttctaatatgaataaataaatgcaatatgcaaatca |
169 |
Q |
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| T |
48042558 |
tgaggactaaagcaaaaacattcaaatcagaatgttatcaacattggaaattggaataccatatttctaatatgaataaataaatgcaatatgcaaatca |
48042459 |
T |
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| Q |
170 |
aactatatgtgtgcaatttggctatggattggtttcagaaagaatatgaaatccgatctgaacagat |
236 |
Q |
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| T |
48042458 |
aactatatgtgtgcaatttggctatggattgatttcagaaagaatatgaaatccaatctgaacagat |
48042392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 48050333 - 48050170
Alignment:
| Q |
70 |
tgaggactaaagcaaaaacattcaaatcagaatgttatcaacattggaaattggaataccatatt-tctaatatgaat----aaataaatgcaatatgca |
164 |
Q |
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| T |
48050333 |
tgaggactaaagcaaaaacattcaaatcagaatgttatcaacattg--------aataccatgttctctaatatgaatgaataaataaatgcaatatgca |
48050242 |
T |
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| Q |
165 |
aatcaaactatatgtgtgcaatttggctatggattggtttcagaaagaatatgaaatccgatctgaacagat |
236 |
Q |
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| T |
48050241 |
aatcaaactagatgtgtgtaatttggctatggattggtttaagaaagaatataaaacccgatctgaacagat |
48050170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 48055667 - 48055526
Alignment:
| Q |
70 |
tgaggactaaagcaaaaacattcaaatcagaatgttatcaacattggaaattggaataccatatttctaatatgaa-taaataaatgcaatatgcaaatc |
168 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||| |||||||| | ||||| |||||| |
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| T |
48055667 |
tgaggactaaagcaaaaaaattcaaatcagaatgttgtcaacattgaaaa--------ccatatttctaatatgagctaaataaaaggaatatccaaatc |
48055576 |
T |
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| Q |
169 |
aaactatatgtgtgcaatttggctatggattggtttcagaaagaatatga |
218 |
Q |
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| T |
48055575 |
aaactatatgtgtgcaatttggctatgaattggtttcagaatgaatatga |
48055526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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