View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0839_high_39 (Length: 252)

Name: NF0839_high_39
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0839_high_39
NF0839_high_39
[»] chr1 (3 HSPs)
chr1 (8-252)||(16828496-16828740)
chr1 (167-220)||(29415739-29415792)
chr1 (166-218)||(30847734-30847786)
[»] chr5 (7 HSPs)
chr5 (166-224)||(4344729-4344787)
chr5 (178-218)||(16315866-16315906)
chr5 (169-225)||(43001786-43001842)
chr5 (170-225)||(13287417-13287472)
chr5 (176-218)||(38749587-38749629)
chr5 (169-210)||(24906318-24906359)
chr5 (176-225)||(32428950-32428999)
[»] chr6 (3 HSPs)
chr6 (176-238)||(17168867-17168929)
chr6 (166-212)||(34446564-34446610)
chr6 (166-210)||(19602195-19602239)
[»] chr3 (7 HSPs)
chr3 (178-228)||(19323474-19323524)
chr3 (167-210)||(11093571-11093614)
chr3 (166-208)||(20691322-20691364)
chr3 (166-210)||(12704671-12704715)
chr3 (146-205)||(21149073-21149133)
chr3 (193-225)||(28590859-28590891)
chr3 (193-225)||(33353253-33353285)
[»] chr8 (2 HSPs)
chr8 (167-211)||(29198689-29198733)
chr8 (192-225)||(13487868-13487901)
[»] chr7 (2 HSPs)
chr7 (166-218)||(38134420-38134472)
chr7 (166-228)||(44317300-44317362)
[»] chr4 (6 HSPs)
chr4 (166-218)||(5654605-5654657)
chr4 (166-211)||(20743292-20743337)
chr4 (166-211)||(31243562-31243607)
chr4 (166-218)||(10546141-10546193)
chr4 (169-225)||(21945489-21945545)
chr4 (176-228)||(24846802-24846854)
[»] chr2 (3 HSPs)
chr2 (147-211)||(30298443-30298506)
chr2 (166-211)||(10535773-10535818)
chr2 (176-217)||(25317131-25317172)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 16828496 - 16828740
Alignment:
Q  8 cgaataatatcatgagtattgtcaaccgtcattnnnnnnngttataattttaagtactcaccctacttattatatttatatattttagagattaaattaa 107  Q
    |||| ||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16828496 cgaaaaatgtcatgagtattgtcaaccgtcattaaaaaaagttataattttaagtactcaccctacttattatatttatatattttagagattaaattaa 16828595  T
Q  108 agataatggtagccccgacacttttgatgaaagacatgtggtgtccgacactgacatcatgattacgctgaattatgtcatttcttcaaattattatcag 207  Q
    |||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  16828596 agataatgatagccccgacacttttgatggaagacacgtggtgtccgacactgacaccatgattacgctgaattatgtcatttcatcaaattattatcag 16828695  T
Q  208 tgtcaacatgttagtgtcgtggttggtgtccaagataaaaaccat 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16828696 tgtcaacatgttagtgtcgtggttggtgtccaagataaaaaccat 16828740  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 29415792 - 29415739
Alignment:
Q  167 tgattacgctgaattatgtcatttcttcaaattattatcagtgtcaacatgtta 220  Q
    |||||| |||||||||||||||||  | |||||||||||||| |||||||||||    
T  29415792 tgattatgctgaattatgtcattttcttaaattattatcagtttcaacatgtta 29415739  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 30847734 - 30847786
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagtgtcaacatgt 218  Q
    ||||||||  ||||||||||||||| |||||||||||| |||||||| |||||    
T  30847734 atgattacattgaattatgtcattttttcaaattattagcagtgtcagcatgt 30847786  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 4344787 - 4344729
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagtgtcaacatgttagtgt 224  Q
    |||||||| |||||||||||||||| |||||||||||||| |||||| | |||||||||    
T  4344787 atgattacactgaattatgtcattttttcaaattattatcggtgtcagcgtgttagtgt 4344729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 16315906 - 16315866
Alignment:
Q  178 aattatgtcatttcttcaaattattatcagtgtcaacatgt 218  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  16315906 aattatatcatttcctcaaattattatcagtgtcaacatgt 16315866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 43001842 - 43001786
Alignment:
Q  169 attacgctgaattatgtcatttcttcaaattattatcagtgtcaacatgttagtgtc 225  Q
    ||||| ||||||||||| |||| |||||||||||| ||||||| |||||| ||||||    
T  43001842 attacactgaattatgtaattttttcaaattattagcagtgtcgacatgtcagtgtc 43001786  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 13287417 - 13287472
Alignment:
Q  170 ttacgctgaattatgtcatttcttcaaattattatcagtgtcaacatgttagtgtc 225  Q
    |||| ||||||||||| |||| |||||||||||||| ||||| || ||||||||||    
T  13287417 ttacactgaattatgtgattttttcaaattattatctgtgtcgacgtgttagtgtc 13287472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 38749587 - 38749629
Alignment:
Q  176 tgaattatgtcatttcttcaaattattatcagtgtcaacatgt 218  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||    
T  38749587 tgaattatgtcattttttcaaattattatcggtgtcgacatgt 38749629  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 24906318 - 24906359
Alignment:
Q  169 attacgctgaattatgtcatttcttcaaattattatcagtgt 210  Q
    ||||| |||||||||||||||| |||||||||||||| ||||    
T  24906318 attacactgaattatgtcattttttcaaattattatctgtgt 24906359  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 32428950 - 32428999
Alignment:
Q  176 tgaattatgtcatttcttcaaattattatcagtgtcaacatgttagtgtc 225  Q
    |||||||||||| ||  |||||||||||||||||||| ||||| ||||||    
T  32428950 tgaattatgtcactttctcaaattattatcagtgtcaccatgtcagtgtc 32428999  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 17168929 - 17168867
Alignment:
Q  176 tgaattatgtcatttcttcaaattattatcagtgtcaacatgttagtgtcgtggttggtgtcc 238  Q
    ||||||||||||||| ||||||||||||||| |||| || |||| |||||||| | |||||||    
T  17168929 tgaattatgtcattttttcaaattattatcaatgtcgacgtgtttgtgtcgtgttcggtgtcc 17168867  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 34446610 - 34446564
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagtgtca 212  Q
    |||||||| ||||||||||||||||  ||||||||||||| ||||||    
T  34446610 atgattacactgaattatgtcattttctcaaattattatccgtgtca 34446564  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 19602195 - 19602239
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagtgt 210  Q
    |||||||| ||||||||| ||||||  ||||||||||||||||||    
T  19602195 atgattacactgaattatatcattttctcaaattattatcagtgt 19602239  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 19323474 - 19323524
Alignment:
Q  178 aattatgtcatttcttcaaattattatcagtgtcaacatgttagtgtcgtg 228  Q
    |||||||||||||  |||||||| |||||||||| ||||||||||||||||    
T  19323474 aattatgtcattttctcaaattactatcagtgtcgacatgttagtgtcgtg 19323524  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 11093614 - 11093571
Alignment:
Q  167 tgattacgctgaattatgtcatttcttcaaattattatcagtgt 210  Q
    |||||||  ||||||||||||||| |||||||||||||||||||    
T  11093614 tgattactttgaattatgtcattttttcaaattattatcagtgt 11093571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 20691364 - 20691322
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagt 208  Q
    |||||||| ||||||||||||||||  ||||||||||||||||    
T  20691364 atgattacactgaattatgtcattttctcaaattattatcagt 20691322  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 12704671 - 12704715
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagtgt 210  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||    
T  12704671 atgattacattgaattatgtcattttttcaaattattatccgtgt 12704715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 21149133 - 21149073
Alignment:
Q  146 tggtgtccgacactgacatcat-gattacgctgaattatgtcatttcttcaaattattatc 205  Q
    ||||||||||||  |||||| | |||||| ||||||||||||||||  |||||||||||||    
T  21149133 tggtgtccgacaacgacatctttgattacactgaattatgtcattttctcaaattattatc 21149073  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 28590891 - 28590859
Alignment:
Q  193 tcaaattattatcagtgtcaacatgttagtgtc 225  Q
    ||||||||||||| |||||||||||||||||||    
T  28590891 tcaaattattatcggtgtcaacatgttagtgtc 28590859  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 33353253 - 33353285
Alignment:
Q  193 tcaaattattatcagtgtcaacatgttagtgtc 225  Q
    |||||||||||||||| ||||||||||||||||    
T  33353253 tcaaattattatcagtttcaacatgttagtgtc 33353285  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 29198689 - 29198733
Alignment:
Q  167 tgattacgctgaattatgtcatttcttcaaattattatcagtgtc 211  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||||    
T  29198689 tgattacgctgaattatgccattttttctaattattatcagtgtc 29198733  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 225
Target Start/End: Complemental strand, 13487901 - 13487868
Alignment:
Q  192 ttcaaattattatcagtgtcaacatgttagtgtc 225  Q
    |||||||||||||| |||||||||||||||||||    
T  13487901 ttcaaattattatcggtgtcaacatgttagtgtc 13487868  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 38134420 - 38134472
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagtgtcaacatgt 218  Q
    ||||||||  |||||||||||||||  ||||||||||||| ||||||||||||    
T  38134420 atgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgt 38134472  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 44317300 - 44317362
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagtgtcaacatgttagtgtcgtg 228  Q
    ||||||||  ||||||||||||||| || ||| | |||||||||||||| |||||| ||||||    
T  44317300 atgattacattgaattatgtcatttttttaaaattttatcagtgtcaacgtgttagggtcgtg 44317362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 5654605 - 5654657
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagtgtcaacatgt 218  Q
    ||||||||  |||||||||||||||  ||||||||||||||||||| ||||||    
T  5654605 atgattacattgaattatgtcattttctcaaattattatcagtgtcgacatgt 5654657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 20743292 - 20743337
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagtgtc 211  Q
    |||||||| ||||||||||||||||  ||||||||||||| |||||    
T  20743292 atgattacactgaattatgtcattttctcaaattattatccgtgtc 20743337  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 31243562 - 31243607
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagtgtc 211  Q
    |||||||| ||||||||||||||||  |||||||||||| ||||||    
T  31243562 atgattacactgaattatgtcattttctcaaattattataagtgtc 31243607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 10546193 - 10546141
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagtgtcaacatgt 218  Q
    ||||||||  |||||||||||||||  |||||||||||||| |||| ||||||    
T  10546193 atgattacattgaattatgtcattttctcaaattattatcattgtcgacatgt 10546141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 21945545 - 21945489
Alignment:
Q  169 attacgctgaattatgtcatttcttcaaattattatcagtgtcaacatgttagtgtc 225  Q
    ||||| |||||||||||||||| |||||||||||| | |||||  ||||| ||||||    
T  21945545 attacactgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtc 21945489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 24846802 - 24846854
Alignment:
Q  176 tgaattatgtcatttcttcaaattattatcagtgtcaacatgttagtgtcgtg 228  Q
    |||||||||||||||  |||||||||||||||| ||||| | || ||||||||    
T  24846802 tgaattatgtcatttgctcaaattattatcagtttcaacgtattcgtgtcgtg 24846854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 30298443 - 30298506
Alignment:
Q  147 ggtgtccgacactgacatcatgattacgctgaattatgtcatttcttcaaattattatcagtgtc 211  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||  | ||||||||||| |||||    
T  30298443 ggtgtccgacaccgaca-catgattacactgaattatgtcattttattaaattattatcggtgtc 30298506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 10535773 - 10535818
Alignment:
Q  166 atgattacgctgaattatgtcatttcttcaaattattatcagtgtc 211  Q
    |||||||| ||||||||||||||||  ||||||||||||| |||||    
T  10535773 atgattacactgaattatgtcattttctcaaattattatcggtgtc 10535818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 25317172 - 25317131
Alignment:
Q  176 tgaattatgtcatttcttcaaattattatcagtgtcaacatg 217  Q
    ||||||||||||||| |||||||||||||| ||||| |||||    
T  25317172 tgaattatgtcattttttcaaattattatcggtgtcgacatg 25317131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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