View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_high_45 (Length: 226)
Name: NF0839_high_45
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 15509086 - 15509124
Alignment:
| Q |
57 |
cgtagttaaggctttgtacgatgttattgatgatgtcca |
95 |
Q |
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| T |
15509086 |
cgtagttaaggctttgtacgatgttattgatgatatcca |
15509124 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15509031 - 15509067
Alignment:
| Q |
1 |
gtttttcttttatattaatccactgcaaatgcgtccc |
37 |
Q |
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| T |
15509031 |
gtttttcttttatattaatccaccgcaaatgcgtccc |
15509067 |
T |
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