View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0839_low_1 (Length: 858)

Name: NF0839_low_1
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0839_low_1
NF0839_low_1
[»] chr1 (23 HSPs)
chr1 (70-783)||(48041845-48042558)
chr1 (70-490)||(48049925-48050333)
chr1 (396-555)||(48055301-48055461)
chr1 (70-282)||(48055462-48055667)
chr1 (334-403)||(29812827-29812896)
chr1 (334-403)||(48040173-48040242)
chr1 (334-403)||(48049407-48049476)
chr1 (334-403)||(39972788-39972857)
chr1 (334-403)||(48054679-48054748)
chr1 (334-403)||(5126504-5126573)
chr1 (334-403)||(22908324-22908393)
chr1 (334-403)||(48033103-48033172)
chr1 (334-403)||(48034711-48034780)
chr1 (334-403)||(48035758-48035827)
chr1 (334-403)||(48041324-48041393)
chr1 (334-403)||(48050609-48050678)
chr1 (334-403)||(48053127-48053196)
chr1 (334-403)||(48055943-48056012)
chr1 (334-416)||(48036708-48036790)
chr1 (334-403)||(48042835-48042904)
chr1 (345-403)||(29813662-29813720)
chr1 (334-403)||(48048642-48048712)
chr1 (334-393)||(48054322-48054381)
[»] chr7 (4 HSPs)
chr7 (334-405)||(43920605-43920676)
chr7 (334-404)||(23780468-23780538)
chr7 (334-405)||(40706104-40706175)
chr7 (341-398)||(46064797-46064854)
[»] chr4 (3 HSPs)
chr4 (334-405)||(38393565-38393636)
chr4 (334-403)||(49152537-49152606)
chr4 (341-398)||(26929298-26929355)
[»] chr3 (6 HSPs)
chr3 (334-405)||(53107637-53107708)
chr3 (334-403)||(31125753-31125822)
chr3 (334-403)||(38930473-38930542)
chr3 (334-403)||(34974803-34974872)
chr3 (334-403)||(47565679-47565748)
chr3 (334-403)||(53682982-53683051)
[»] chr2 (7 HSPs)
chr2 (334-405)||(6801056-6801127)
chr2 (334-404)||(39990579-39990649)
chr2 (334-403)||(35926127-35926196)
chr2 (334-404)||(13326998-13327068)
chr2 (334-403)||(6796497-6796566)
chr2 (334-403)||(7181564-7181633)
chr2 (334-403)||(35920136-35920205)
[»] chr6 (6 HSPs)
chr6 (334-403)||(10754599-10754668)
chr6 (334-404)||(992444-992514)
chr6 (334-403)||(10750282-10750351)
chr6 (334-405)||(18613086-18613157)
chr6 (349-403)||(32678635-32678689)
chr6 (334-403)||(10748686-10748755)


Alignment Details
Target: chr1 (Bit Score: 690; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 70 - 783
Target Start/End: Complemental strand, 48042558 - 48041845
Alignment:
Q  70 tgaggactaaagcaaaaacattcaaatcagaatgttatcaacattggaaattggaataccatatttctaatatgaataaataaatgcaatatgcaaatca 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48042558 tgaggactaaagcaaaaacattcaaatcagaatgttatcaacattggaaattggaataccatatttctaatatgaataaataaatgcaatatgcaaatca 48042459  T
Q  170 aactatatgtgtgcaatttggctatggattggtttcagaaagaatatgaaatccgatctgaacagattttattgaagatccacaaatgttgaataaaaat 269  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48042458 aactatatgtgtgcaatttggctatggattgatttcagaaagaatatgaaatccaatctgaacagattttattgaagatccacaaatgttgaataaaaat 48042359  T
Q  270 tggtcttgggcagttttcaaacaccggcaatagtaaaaactaactaacgctatataaaagatgtggcattccgagaatcgaactcggaacctctcgcacc 369  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48042358 tggtcttgggcagttttcaaacaccgacaatagtaaaaactaactaacgctatataaaagatggggcattccgagaatcgaactcggaacctctcgcacc 48042259  T
Q  370 cgaagcgagaatcataccactagaccaaatgcccatattgaagtaagcatggttaggtgagatatatgacttcttgttactattaaaattgtttatgcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48042258 cgaagcgagaatcataccactagaccaaatgcccatattgaagtaagcatggttaggtgagatatatgacttcttgttactattaaaattgtttatgcat 48042159  T
Q  470 gccacatggtctgcagttgtaaagtaatttagcatgaaaatgaccagatctgcttatttggatacacaattgttagttgttcttcaacatataacgtacc 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48042158 gccacatggtctgcagttgtaaagtaatttagcatgaaaatgaccagatctgcttatttggatacacaattgttagttgttcttcaacatataacgtacc 48042059  T
Q  570 caacagaaactggctgctcttctcttgataatgaggccactggacgaagctaccgatctctaaggctaacatgtttttctaggcaagatatcaaagagtc 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48042058 caacagaaactggctgctcttctcttgataatgaggccactggacgaagctaccgatctctaaggctaacatgtttttctaggcaagatatcaaagagtc 48041959  T
Q  670 atttaatcatttagttggaggttcgacccctgattattgcgtaaagaaaaaacatcatttataagagatcatctcctgaaatgattctcggctaagttga 769  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48041958 atttaatcatttagttggaggttcgacccctgattattgcataaagataaaacatcatttataagagatcatctcctgaaatgattctcggctaagttga 48041859  T
Q  770 gatatcagtctctg 783  Q
    ||||||||||||||    
T  48041858 gatatcagtctctg 48041845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 70 - 490
Target Start/End: Complemental strand, 48050333 - 48049925
Alignment:
Q  70 tgaggactaaagcaaaaacattcaaatcagaatgttatcaacattggaaattggaataccatatt-tctaatatgaat----aaataaatgcaatatgca 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        |||||||| || ||||||||||||    ||||||||||||||||||    
T  48050333 tgaggactaaagcaaaaacattcaaatcagaatgttatcaacattg--------aataccatgttctctaatatgaatgaataaataaatgcaatatgca 48050242  T
Q  165 aatcaaactatatgtgtgcaatttggctatggattggtttcagaaagaatatgaaatccgatctgaacagattttattgaaga---tccacaaatgttga 261  Q
    |||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||   |||| |||| ||||    
T  48050241 aatcaaactagatgtgtgtaatttggctatggattggtttaagaaagaatataaaacccgatctgaacagattttattgaagaagatccaaaaatattga 48050142  T
Q  262 ataaaaattggtcttgggcagttttcaaacaccggcaatagtaaaaactaactaacgctatataaaagatgtggcattccgagaatcgaactcggaacct 361  Q
    || ||||||||| ||||||||||||||||||| |  |||| ||||       ||||       |||| ||| ||||||||||||||||||||||||||||    
T  48050141 atgaaaattggttttgggcagttttcaaacactgagaatactaaat------taac-------aaaaaatggggcattccgagaatcgaactcggaacct 48050055  T
Q  362 ctcgcacccgaagcgagaatcataccactagaccaaatgcccatattgaagtaagcatggttaggtgagatatatgacttcttg-ttactattaaaattg 460  Q
    ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| ||    
T  48050054 ctcacacccaaagcgagaatcataccactagaccaaatggccatattgaagtaagcaaggttaggtgagatatatgtcttcttgtttactattgaaaatg 48049955  T
Q  461 tttatgcatgccacatggtctgcagttgta 490  Q
    || |||||| ||||||||||||||||||||    
T  48049954 ttaatgcataccacatggtctgcagttgta 48049925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 396 - 555
Target Start/End: Complemental strand, 48055461 - 48055301
Alignment:
Q  396 aaatgcccatattgaagtaagcatggttaggtgagatatatgacttcttgtt-actattaaaattgtttatgcatgccacatggtctgcagttgtaaagt 494  Q
    ||||||||||||||||||||||| ||||||||||||| |||| ||||||||| | || | |||||||| ||| || ||||||||||||||||||||  ||    
T  48055461 aaatgcccatattgaagtaagcaaggttaggtgagatctatgtcttcttgtttagtaatgaaattgttcatgaataccacatggtctgcagttgtattgt 48055362  T
Q  495 aatttagcatgaaaatgaccagatctgcttatttggatacacaattgttagttgttcttca 555  Q
    ||| | ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  48055361 aatattgcatgaaaatgaccaaatctgcttatttggatacacaattgttggttgttcttca 48055301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 70 - 282
Target Start/End: Complemental strand, 48055667 - 48055462
Alignment:
Q  70 tgaggactaaagcaaaaacattcaaatcagaatgttatcaacattggaaattggaataccatatttctaatatgaa-taaataaatgcaatatgcaaatc 168  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||| |||        |||||||||||||||||  |||||||| | ||||| ||||||    
T  48055667 tgaggactaaagcaaaaaaattcaaatcagaatgttgtcaacattgaaaa--------ccatatttctaatatgagctaaataaaaggaatatccaaatc 48055576  T
Q  169 aaactatatgtgtgcaatttggctatggattggtttcagaaagaatatgaaatccgatctgaacagattttattgaagatccacaaatgttgaataaaaa 268  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||   || |||||||||||||  |||||||| |||| |  ||| ||||    
T  48055575 aaactatatgtgtgcaatttggctatgaattggtttcagaatgaatatgatatcgtttccgaacagattttataaaagatccaaaaatatcaaatgaaaa 48055476  T
Q  269 ttggtcttgggcag 282  Q
    ||||| ||||||||    
T  48055475 ttggttttgggcag 48055462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 29812827 - 29812896
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  29812827 ggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 29812896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48040242 - 48040173
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48040242 ggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48040173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48049476 - 48049407
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48049476 ggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48049407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 39972788 - 39972857
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  39972788 ggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 39972857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48054748 - 48054679
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  48054748 ggcattccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatgccc 48054679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 5126573 - 5126504
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  5126573 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 5126504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 22908393 - 22908324
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  22908393 ggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 22908324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48033172 - 48033103
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48033172 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48033103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48034780 - 48034711
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48034780 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48034711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48035827 - 48035758
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48035827 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48035758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48041393 - 48041324
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48041393 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48041324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48050678 - 48050609
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48050678 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48050609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48053196 - 48053127
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||| |||||||||||||||||||||    
T  48053196 ggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagaccaaatgccc 48053127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48056012 - 48055943
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  48056012 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48055943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 334 - 416
Target Start/End: Complemental strand, 48036790 - 48036708
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccatattgaagtaag 416  Q
    ||||||| ||||||| ||||| | |||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||||    
T  48036790 ggcattcggagaatcaaactccggacctctggcacccaaagcgagaatcataccactagaccaaatacccatcttgaagtaag 48036708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48042904 - 48042835
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||||||||    
T  48042904 ggcattcagagaatcgaactccgggcctctcgcacccaaagcgagaatcataccactagaccaaatgccc 48042835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 29813662 - 29813720
Alignment:
Q  345 aatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||||||| | ||||||||||||| |||||||||||| |||||||||||||||||||    
T  29813662 aatcgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatgccc 29813720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 48048712 - 48048642
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccacta-gaccaaatgccc 403  Q
    ||||||||||||||| |||| || ||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  48048712 ggcattccgagaatcaaacttgggacctctcgcacccaaagcgagaatgataccactaggaccaaatgccc 48048642  T

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Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 48054381 - 48054322
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactaga 393  Q
    ||||||| ||||||||||||| | ||||||||||||| |||||||||||||  |||||||    
T  48054381 ggcattctgagaatcgaactcaggacctctcgcacccaaagcgagaatcatttcactaga 48054322  T

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Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 43920676 - 43920605
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccat 405  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43920676 ggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 43920605  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 23780538 - 23780468
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccca 404  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  23780538 ggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccca 23780468  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 40706175 - 40706104
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccat 405  Q
    |||||||||||||| |||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  40706175 ggcattccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatgcccat 40706104  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 46064797 - 46064854
Alignment:
Q  341 cgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaa 398  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  46064797 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 46064854  T

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Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 38393565 - 38393636
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccat 405  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38393565 ggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 38393636  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 49152537 - 49152606
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  49152537 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 49152606  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 26929298 - 26929355
Alignment:
Q  341 cgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaa 398  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  26929298 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 26929355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 4e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 53107708 - 53107637
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccat 405  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53107708 ggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 53107637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 31125822 - 31125753
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  31125822 ggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 31125753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 38930473 - 38930542
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  38930473 ggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 38930542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 34974872 - 34974803
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  34974872 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 34974803  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 47565679 - 47565748
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  47565679 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 47565748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 53683051 - 53682982
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  53683051 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 53682982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 6801056 - 6801127
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccat 405  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6801056 ggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 6801127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 334 - 404
Target Start/End: Complemental strand, 39990649 - 39990579
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccca 404  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  39990649 ggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccca 39990579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 35926127 - 35926196
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  35926127 ggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 35926196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 13326998 - 13327068
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccca 404  Q
    ||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||    
T  13326998 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccca 13327068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 6796566 - 6796497
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  6796566 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 6796497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 334 - 403
Target Start/End: Complemental strand, 7181633 - 7181564
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    ||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||    
T  7181633 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccc 7181564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 35920136 - 35920205
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||||||||||| ||||| || ||||||||||||| |||| |||||||||||||||||||| ||||||    
T  35920136 ggcattccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagaccagatgccc 35920205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 6e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 10754599 - 10754668
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  10754599 ggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccc 10754668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 992444 - 992514
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccca 404  Q
    ||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||    
T  992444 ggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatgccca 992514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 10750282 - 10750351
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||||||||||| |||||||| |||||| |||||| |||||||||||||||||||||| |||||||||    
T  10750282 ggcattccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatgccc 10750351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 18613157 - 18613086
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccat 405  Q
    ||||||||||||||  ||||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  18613157 ggcattccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactagatcaaatgcccat 18613086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 32678635 - 32678689
Alignment:
Q  349 gaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||| | ||||||| ||||| ||||||||||||||||||||||||||||||||    
T  32678635 gaactcaggacctctcacacccaaagcgagaatcataccactagaccaaatgccc 32678689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 10748686 - 10748755
Alignment:
Q  334 ggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgccc 403  Q
    |||||||||||||| || ||||  ||||||| ||||| || ||||||||||| |||||||||||||||||    
T  10748686 ggcattccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatgccc 10748755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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