View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_10 (Length: 501)
Name: NF0839_low_10
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 29 - 489
Target Start/End: Original strand, 42007993 - 42008442
Alignment:
| Q |
29 |
agaaacatctcatgatgtgtgcaactaactaataaaaagttagttaagttgtaatagttatgtctataaaagataacaatcaatgttactcgatggataa |
128 |
Q |
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| T |
42007993 |
agaaacatcgcatgatgtgtgcaactaactaataaaaagttagttaagttgtaatagttatgtctataaaagataacaatcaatgtttttcgatggataa |
42008092 |
T |
|
| Q |
129 |
tttctattttattcctcttcaattaactctcccgaaagaagcttcgctagtgtaactataagtgtgtgaactgaattcttgagtgaaacaactaccctac |
228 |
Q |
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| T |
42008093 |
tatctattttattcctcttcaatcaactctcccgaaagaagcttcgttagtgtaactataagtgtgtgaactgaattcttgagtgaaacaactaccctat |
42008192 |
T |
|
| Q |
229 |
ctaaatatgttgacggtcacatgttataatgtcataaatgtcaaggtgacatgactcacatgagcgagcaaacatatttatttatttttgacgaaagtga |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42008193 |
ctaaatatgttgacggtcacatgttataatgtcataaatgtcaaagtgacatgactcacatgagcgagcaaacatatttatttatttttgacgaaagtga |
42008292 |
T |
|
| Q |
329 |
gcaaacattattatcaattggtgttttctcaaaagtcttggtgtacacaaaaagctgaccaagaatgaaaggaacaatgtcatcgttgcaaatgcacttc |
428 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42008293 |
gcaaacattattatcaatcggtgttttctcaaaagtcttggtgtacacaaaaagctgaccaagaatgaaaggaacaatgtcatcgttgcaaatgcacttc |
42008392 |
T |
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| Q |
429 |
ttccattcaatgaataccaaaagcaaactggtcagcttgcttttctccgctctgtcatatt |
489 |
Q |
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| T |
42008393 |
----------tgaataccaaaagcaaact-gtcagcttgcttttctccgctctgtcatatt |
42008442 |
T |
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