View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0839_low_12 (Length: 479)

Name: NF0839_low_12
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0839_low_12
NF0839_low_12
[»] chr7 (6 HSPs)
chr7 (91-473)||(12819442-12819835)
chr7 (164-219)||(19325740-19325795)
chr7 (165-214)||(19645452-19645501)
chr7 (166-211)||(20057832-20057877)
chr7 (169-206)||(22520056-22520093)
chr7 (103-136)||(29476163-29476196)
[»] chr5 (6 HSPs)
chr5 (155-211)||(29597333-29597389)
chr5 (155-214)||(29642598-29642657)
chr5 (165-214)||(29593979-29594028)
chr5 (165-214)||(29820964-29821013)
chr5 (165-214)||(29647929-29647978)
chr5 (218-247)||(29820919-29820948)
[»] chr6 (1 HSPs)
chr6 (166-219)||(24254184-24254237)
[»] chr4 (1 HSPs)
chr4 (164-205)||(53790819-53790860)
[»] chr3 (2 HSPs)
chr3 (164-214)||(25901042-25901092)
chr3 (167-214)||(25915060-25915107)
[»] chr8 (1 HSPs)
chr8 (166-216)||(27618720-27618770)
[»] chr2 (1 HSPs)
chr2 (171-211)||(21021047-21021087)


Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 91 - 473
Target Start/End: Complemental strand, 12819835 - 12819442
Alignment:
Q  91 aggaaatgatgtaattctctataatttgagagaaaatagagtagagaaatctagtggatatatatggtgtgatgccaaggattatgttgaaagtttggct 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12819835 aggaaatgatgtaattctctataatttgagagaaaatagagtagagaaatctagtggatatacatggtgtgatgccaaggattatgttgaaagtttggct 12819736  T
Q  191 tcaatttgttgaaagtgagtttctatatgttc------------gaatttatttgaattcatgtatgttgacttaaatttcttgtgatataaaccatttt 278  Q
    |||||||||||||| |||||||||| |||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12819735 tcaatttgttgaaactgagtttctacatgttgatttacttgtttgaatttatttgaattcatgtatgttgacttaaatttcttgtgatataaaccatttt 12819636  T
Q  279 tcattcactagatgctgcttaattgcctgcatttttcggttagttttgcgattgtgattgacaatgatttacttgaattgatggctactgctgcaagaag 378  Q
    |||||||||||||| || |  |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12819635 tcattcactagatgttg-tgcattgcctgcatttttcggttagatttgcgattgtgattgtcaatgatttacttgaattgatggctactgctgcaagaag 12819537  T
Q  379 cacaaacttatgactttaatttaacagcttgagactaaattcataactcatcattgcacccgatatgaataatactgcatagtaccctatgatac 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12819536 cacaaacttatgactttaatttaacagcttgagactaaattcataactcatcattgcacccgatatgaataatactgcatagtacgctatgatac 12819442  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 19325795 - 19325740
Alignment:
Q  164 gccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttctatatg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  19325795 gccaaggattatgttgaaagtttggcttcaatttgttgaaagtaagtttctttatg 19325740  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 19645501 - 19645452
Alignment:
Q  165 ccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 214  Q
    |||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  19645501 ccaaggattatgttgaaagtttggtttcaacttgttgaaagtaagtttct 19645452  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 20057877 - 20057832
Alignment:
Q  166 caaggattatgttgaaagtttggcttcaatttgttgaaagtgagtt 211  Q
    |||||||||||||||||| |||||||||| ||||||| ||| ||||    
T  20057877 caaggattatgttgaaagcttggcttcaacttgttgatagtaagtt 20057832  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 22520093 - 22520056
Alignment:
Q  169 ggattatgttgaaagtttggcttcaatttgttgaaagt 206  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  22520093 ggattatgttgaaagcttggtttcaatttgttgaaagt 22520056  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 29476196 - 29476163
Alignment:
Q  103 aattctctataatttgagagaaaatagagtagag 136  Q
    |||||||||||||| |||||||||||||||||||    
T  29476196 aattctctataattggagagaaaatagagtagag 29476163  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 29597389 - 29597333
Alignment:
Q  155 tggtgtgatgccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtt 211  Q
    |||||| || |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  29597389 tggtgttattccaaggattatgttgaaagtttggcttcgatttgttgaaagtaagtt 29597333  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 29642598 - 29642657
Alignment:
Q  155 tggtgtgatgccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 214  Q
    |||||| || |||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  29642598 tggtgttattccaaggattatgttgaaagtttggcttggatttgttgaaagtaagtttct 29642657  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 29594028 - 29593979
Alignment:
Q  165 ccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 214  Q
    ||||||||||| |||||||||||||||| |||| |||||||| |||||||    
T  29594028 ccaaggattattttgaaagtttggcttcgatttcttgaaagtaagtttct 29593979  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 29821013 - 29820964
Alignment:
Q  165 ccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 214  Q
    |||||||||||||||||||||| ||||  ||||||||||||| |||||||    
T  29821013 ccaaggattatgttgaaagtttagcttggatttgttgaaagtaagtttct 29820964  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 29647929 - 29647978
Alignment:
Q  165 ccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 214  Q
    ||||||||| |||||||| ||||||||  ||||||||||||| |||||||    
T  29647929 ccaaggattgtgttgaaaatttggcttggatttgttgaaagtaagtttct 29647978  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 29820948 - 29820919
Alignment:
Q  218 tgttcgaatttatttgaattcatgtatgtt 247  Q
    ||||||||||||||||||||||||||||||    
T  29820948 tgttcgaatttatttgaattcatgtatgtt 29820919  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 24254237 - 24254184
Alignment:
Q  166 caaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttctatatg 219  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||    
T  24254237 caaggattacgttgaaagtttggcttcaatttgttgaaaataagtttctttatg 24254184  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 53790819 - 53790860
Alignment:
Q  164 gccaaggattatgttgaaagtttggcttcaatttgttgaaag 205  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  53790819 gccaaggattatgttgaaagtttggcttcaattcgttgaaag 53790860  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 25901092 - 25901042
Alignment:
Q  164 gccaaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 214  Q
    ||||||||||| ||||||||||||| ||||| | |||||||||||||||||    
T  25901092 gccaaggattacgttgaaagtttggtttcaactagttgaaagtgagtttct 25901042  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 25915107 - 25915060
Alignment:
Q  167 aaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttct 214  Q
    |||||||| ||||||||||||| ||||| | |||||||||||||||||    
T  25915107 aaggattacgttgaaagtttggtttcaactagttgaaagtgagtttct 25915060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 27618720 - 27618770
Alignment:
Q  166 caaggattatgttgaaagtttggcttcaatttgttgaaagtgagtttctat 216  Q
    |||||||||||||||||| |||| |||||||| |||||||| |||| ||||    
T  27618720 caaggattatgttgaaagcttggtttcaatttcttgaaagtaagttcctat 27618770  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 21021087 - 21021047
Alignment:
Q  171 attatgttgaaagtttggcttcaatttgttgaaagtgagtt 211  Q
    |||||||||||||||||| ||||| ||||||||||| ||||    
T  21021087 attatgttgaaagtttggtttcaacttgttgaaagtaagtt 21021047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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