View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0839_low_13 (Length: 451)
Name: NF0839_low_13
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 96 - 422
Target Start/End: Original strand, 13032045 - 13032371
Alignment:
| Q |
96 |
tattgaacagtttcggtcaattaacaaattttatatgagaaggaaatttgatgcaaaatcacatacataataattttatggatacaccacgtcaacacaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13032045 |
tattgaacagtttcggtcaattaacaaattttatatgagaaggaaatttgatgcaaaatcacatacataataattttatggatacaccacgtcaacacaa |
13032144 |
T |
|
| Q |
196 |
agatcacaaaacataataatgaaaaaatccaattgttaatatcatcgtatcaagaaagataacaaaaaatcaagaatcaatttcctaaaaaatataattt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13032145 |
agatcacaaaacataataatgaaaaaatccaattgttaatatcatcgtatcaagaaagataataaaaaatcaagaatcaatttcctaaaaaatataattt |
13032244 |
T |
|
| Q |
296 |
caaactgatactcgtatgttacgagagagtagaaattcaaattaaaaaagtgaggatttttcgagagttaatcaaacaaataaaaatttaatccnnnnnn |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13032245 |
caaactgatactcgtatgttacgagagagtagaaattcaaattaaaaaagtgaggatttttcgagagttaatcaaacaaataaaaatttaatcctttttt |
13032344 |
T |
|
| Q |
396 |
nnnnacgttgaatttagtcaaaataat |
422 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13032345 |
tttcacgttgaatttagtcaaaataat |
13032371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 7418772 - 7418637
Alignment:
| Q |
96 |
tattgaacagtttcggtcaattaacaaattttatatgagaaggaaatttgatgcaaaatcacatacataataattttatggataca--ccacgtcaacac |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
7418772 |
tattgaacagtttcggtcaattaacaaattttatacgaggaggaaatttgatccaaaatcacacacataataattttatggatacaccccacgtcaacac |
7418673 |
T |
|
| Q |
194 |
aaagatcacaaaacataataatgaaaaaatccaatt |
229 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7418672 |
aaagatcacaaaacataatagtgaaaaaatccaatt |
7418637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 221 - 358
Target Start/End: Complemental strand, 7418622 - 7418482
Alignment:
| Q |
221 |
aatccaattgttaatatcatcgtatcaagaaagataacaaaaaatcaagaatcaatttcctaaaaaa---tataatttcaaactgatactcgtatgttac |
317 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||| || |
|
|
| T |
7418622 |
aatccaactgttaatatcatcgtatcaagaaatataataaaaaatcaagagtcaatttcctaagaaaaattataatttcaaacagatactcgtatgtcac |
7418523 |
T |
|
| Q |
318 |
gagagagtagaaattcaaattaaaaaagtgaggatttttcg |
358 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
7418522 |
gagagggtaaaaattcaaactaaaaaagtgaggaattttcg |
7418482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1889 times since January 2019
Visitors: 6151