View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_15 (Length: 407)
Name: NF0839_low_15
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 30 - 385
Target Start/End: Original strand, 3430200 - 3430564
Alignment:
| Q |
30 |
ctcctcttccacttctgaaagaatattgagcaaagagaccaacaccatcatcatcatc---------ttcatgaataagatttcctcgtgaaattagcag |
120 |
Q |
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| T |
3430200 |
ctcctcttccacttctgaaagaatattgagcaaagagaccaacaccatcatcatcatcatcatcatcttcatgaataagatttcctcgtgaaatcagcag |
3430299 |
T |
|
| Q |
121 |
tggcgctgatgagcagcgtttcaaggtattgatcaattttgacttattctttgtcctacaacgcggcgacggtgatggatgcggtggnnnnnnnctccgg |
220 |
Q |
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| T |
3430300 |
tggcgctgatgagcagcgtttcaaggtattgatcaattttgacttattctttgtcctacaacgcggcgacggtgatggatgcggtggtttttttctccgg |
3430399 |
T |
|
| Q |
221 |
gatgtaatcgccggcgatcttaaggtttgcgacatgcaatataggaataggaattaggaaaggtatgggctttggtgaagaagataaaatattaatagtt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3430400 |
gatgtaatcgccggcgatcttaaggtttgcgacatgcaatataggaataggaattaggaaaggtatgggctttggtgaagaagataaaatattaatagtt |
3430499 |
T |
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| Q |
321 |
tatttggaatggataaatgggagatgagaagagaaataagaatggtggttatgaattatgatgat |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3430500 |
tatttggaatggataaatgggagatgagaagagaaataagaatggtggttatgaattatgatgat |
3430564 |
T |
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