View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0839_low_16 (Length: 394)
Name: NF0839_low_16
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 33 - 379
Target Start/End: Original strand, 39100136 - 39100485
Alignment:
| Q |
33 |
agtagcttataaaggcaaatatgcacatgggtgaccatctccacatgaaatccaatccacaagacacgtgcatcccacagagcttttgcagagaggcatt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39100136 |
agtagcttataaaggcaaatatgcacatgggtgaccatctccacatgaaatccaatccacaagacacgtgcatcccacagagcttttgcagagaggcatt |
39100235 |
T |
|
| Q |
133 |
ggaatgataaaaccacatagtggataaattctggagaatacgaggcaatttaatttaatttaatttaaatggatgcataatatcttgaaagtc---catt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
39100236 |
ggaatgataaaaccacatagtggataaattctggagaatacgaggcaatttaatttaatttaatttaaatggatgcataatgtcttgaaagtctcgaatc |
39100335 |
T |
|
| Q |
230 |
ggatagaagatggcatgacaatgtgtatgtataagtggaggtaattcttatctcaaaaagttggttttgtgggattttgttaggtctgaccatcatttct |
329 |
Q |
| |
|
||||| |||||| |||||||||||||||||| ||||||||||||| |||| ||||||| | |||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
39100336 |
ggatataagatgacatgacaatgtgtatgtacaagtggaggtaatccttacttcaaaaaatcggttttgtgggattttgttaggtccgaccaccatttct |
39100435 |
T |
|
| Q |
330 |
aaaatggtatctttaatatcaattagatcatctgctatcaggtttttatt |
379 |
Q |
| |
|
||||||||||||| |||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
39100436 |
aaaatggtatcttcaatatccattgggtcatctgctatcaggtttttatt |
39100485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1766 times since January 2019
Visitors: 6149