View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0839_low_2 (Length: 774)

Name: NF0839_low_2
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0839_low_2
NF0839_low_2
[»] chr5 (21 HSPs)
chr5 (85-545)||(1163360-1163817)
chr5 (85-545)||(3299487-3299965)
chr5 (85-545)||(3392380-3392858)
chr5 (85-468)||(1849919-1850287)
chr5 (85-216)||(39879768-39879899)
chr5 (85-216)||(40418237-40418368)
chr5 (85-216)||(38987659-38987790)
chr5 (85-216)||(39726372-39726503)
chr5 (634-744)||(1163145-1163252)
chr5 (229-530)||(40418417-40418712)
chr5 (85-225)||(39399813-39399953)
chr5 (85-216)||(39168800-39168931)
chr5 (266-536)||(38987873-38988140)
chr5 (266-536)||(39726592-39726863)
chr5 (266-513)||(39879988-39880232)
chr5 (646-726)||(40418870-40418950)
chr5 (284-341)||(39169041-39169098)
chr5 (603-635)||(1163270-1163302)
chr5 (646-690)||(38988292-38988336)
chr5 (658-726)||(39880427-39880495)
chr5 (108-209)||(40102213-40102314)
[»] chr4 (7 HSPs)
chr4 (85-215)||(25912292-25912422)
chr4 (229-349)||(25912122-25912239)
chr4 (143-209)||(44444772-44444838)
chr4 (429-536)||(25911942-25912046)
chr4 (425-536)||(44444435-44444543)
chr4 (646-726)||(25911695-25911775)
chr4 (175-209)||(43996488-43996522)


Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 85 - 545
Target Start/End: Complemental strand, 1163817 - 1163360
Alignment:
Q  85 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcg-cacaacttttcaaatcaagactcatcttggtcgtattttaaaac 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||| ||||||||||||||||||||||||||    
T  1163817 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 1163719  T
Q  184 ctggtgaccatgctcttggttatgacctgtctgctggaggaggtcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcc 283  Q
    | ||||||||||||||||||||||||||| |||    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163718 ccggtgaccatgctcttggttatgacctgcctga---aggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcc 1163622  T
Q  284 tgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaagagcaatctaccgaaatcca 383  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1163621 tgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatcca 1163522  T
Q  384 accaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgatgatctacttacaagc 483  Q
    ||| ||||||||||||||||||||| | |||||||||| |||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1163521 acctactgccatccatctggcccactcttcagatcccccttttatagacctttttttccattggaggatttgcttgatggatgatgatctacttacaagc 1163422  T
Q  484 ttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaaggaagatgc 545  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1163421 ttaaacaaacatcacttctattgatgttttgttacttccaataacaaaaacaaggaagatgc 1163360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 85 - 545
Target Start/End: Original strand, 3299487 - 3299965
Alignment:
Q  85 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataat---cgcacaacttttcaaatcaagactcatcttggtcgtattttaaa 181  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||    
T  3299487 aatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaa 3299586  T
Q  182 acctggtgaccatgctcttggttatgacctgtctgctggaggagg------------------tcccattttgattaccaagattagttttgctaaagag 263  Q
    ||| |||||||||||||||||||||||||||||| |||||||||                   | |||||||||| ||||| ||||||| |||  |||||    
T  3299587 acccggtgaccatgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaaaattagttatgccgaagag 3299686  T
Q  264 gagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaa 363  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  3299687 gagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaa 3299786  T
Q  364 gagcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatgg 463  Q
    |||||||||||||||||| ||||||||||||||||| || | || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||     
T  3299787 gagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatg- 3299885  T
Q  464 atgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaaggaagatgc 545  Q
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  3299886 --gatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 3299965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 85 - 545
Target Start/End: Original strand, 3392380 - 3392858
Alignment:
Q  85 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataat---cgcacaacttttcaaatcaagactcatcttggtcgtattttaaa 181  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||    
T  3392380 aatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaa 3392479  T
Q  182 acctggtgaccatgctcttggttatgacctgtctgctggaggagg------------------tcccattttgattaccaagattagttttgctaaagag 263  Q
    ||| |||||||||||||||||||||||||||||| |||||||||                   | |||||||||| ||||| ||||||| |||  |||||    
T  3392480 acccggtgaccatgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaaaattagttatgccgaagag 3392579  T
Q  264 gagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaa 363  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  3392580 gagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaa 3392679  T
Q  364 gagcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatgg 463  Q
    |||||||||||||||||| ||||||||||||||||| || | || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||     
T  3392680 gagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatg- 3392778  T
Q  464 atgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaaggaagatgc 545  Q
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  3392779 --gatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataaccaaaacaaggaagatgc 3392858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 85 - 468
Target Start/End: Original strand, 1849919 - 1850287
Alignment:
Q  85 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataat---cgcacaacttttcaaatcaagactcatcttggtcgtattttaaa 181  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||   | ||||||||||||||||| |||||||||| |||||||||||||    
T  1849919 aatatcgtttagctaatgccatagttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatcttagtcgtattttaaa 1850018  T
Q  182 acctggtgaccatgctcttggttatgacctgtctgctggaggaggtcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgtt 281  Q
    ||||||||||||||||||||||||||||||| |||    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1850019 acctggtgaccatgctcttggttatgacctgcctga---aggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttatt 1850115  T
Q  282 cctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaagagcaatctaccgaaatc 381  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||               |||||||||    
T  1850116 cctgttcaggataagtgggaatctgattatcaactcttcttaaaagatttacaacaagaccctaaactcctcttcg---------------accgaaatc 1850200  T
Q  382 caaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgat 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850201 caaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgat 1850287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 39879768 - 39879899
Alignment:
Q  85 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 184  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  39879768 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattttaaaacc 39879867  T
Q  185 tggtgaccatgctcttggttatgacctgtctg 216  Q
     |||||||||||||||||||||||||||||||    
T  39879868 cggtgaccatgctcttggttatgacctgtctg 39879899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 40418237 - 40418368
Alignment:
Q  85 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 184  Q
    ||||| |||||||| ||||  | ||||||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  40418237 aatattgtttagctgatgctgtggttgctcgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattttaaaacc 40418336  T
Q  185 tggtgaccatgctcttggttatgacctgtctg 216  Q
     |||||||||||||||||||||||||||||||    
T  40418337 cggtgaccatgctcttggttatgacctgtctg 40418368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 38987659 - 38987790
Alignment:
Q  85 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 184  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| ||||||||||  ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  38987659 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgtatcttaaaacc 38987758  T
Q  185 tggtgaccatgctcttggttatgacctgtctg 216  Q
     |||||||||||||||||||||||||||||||    
T  38987759 cggtgaccatgctcttggttatgacctgtctg 38987790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 39726372 - 39726503
Alignment:
Q  85 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 184  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| ||||||||||  ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  39726372 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgtatcttaaaacc 39726471  T
Q  185 tggtgaccatgctcttggttatgacctgtctg 216  Q
     |||||||||||||||||||||||||||||||    
T  39726472 cggtgaccatgctcttggttatgacctgtctg 39726503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 634 - 744
Target Start/End: Complemental strand, 1163252 - 1163145
Alignment:
Q  634 tttatgtttatcagaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccatttactactt 733  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||   |||||    
T  1163252 tttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtcattatattcggcatataaagttcctttcaccatt---tactt 1163156  T
Q  734 tcctgtcttcc 744  Q
    |||||||||||    
T  1163155 tcctgtcttcc 1163145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 229 - 530
Target Start/End: Original strand, 40418417 - 40418712
Alignment:
Q  229 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaaga 328  Q
    |||||||||| ||||||||||||| |||  |||||   ||||||||||||||| || |||| ||||||||||||||||||||||||| |||||| || ||    
T  40418417 ccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctcttcatgataagtgggaatctgattatcaactcttcttcaatga 40418513  T
Q  329 tttacaacaagaccctaaactcctcttcgaccgaagagcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttaga 428  Q
    | ||||||||||| |||||||||||||| ||  |||||||  ||||||| ||| ||||||  || |  ||| ||     ||| ||  |  |||   ||      
T  40418514 tctacaacaagacactaaactcctcttcaacgtaagagcagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcgtaatcccccctacc 40418613  T
Q  429 agacctttttatccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataac 528  Q
    |||||||||  |||||||||||| |||||||| |||||||   ||| |||| |||||||||||| ||||||| |||| ||||||||||  ||||||||||    
T  40418614 agaccttttgttccattggaggacttgcttgacggatgat---ctagttactagcttaaacaaaaatcacttttgttaatgttttgtttgttccaataac 40418710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 39399813 - 39399953
Alignment:
Q  85 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 184  Q
    |||| ||||||||| ||||| | |||||||||||  || || |||||||||||  ||||||||||||||||| |||||||||||||| |||||||||| |    
T  39399813 aataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatgacacaacttttcaaatcaggactcatcttggtcatattttaaaatc 39399912  T
Q  185 tggtgaccatgctcttggttatgacctgtctgctggaggag 225  Q
     |||||| ||||||||||||||||| ||||||  |||||||    
T  39399913 cggtgactatgctcttggttatgacttgtctggaggaggag 39399953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 39168800 - 39168931
Alignment:
Q  85 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 184  Q
    ||||||| |||||| ||||| | |||||||||||  ||||| |||||||||||  |||||||||||||||||| |||||||| |||| |||||||||| |    
T  39168800 aatatcggttagctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatc 39168899  T
Q  185 tggtgaccatgctcttggttatgacctgtctg 216  Q
     |||||| ||||||||||||||||| ||||||    
T  39168900 cggtgactatgctcttggttatgacttgtctg 39168931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 266 - 536
Target Start/End: Original strand, 38987873 - 38988140
Alignment:
Q  266 gaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaaga 365  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||| || ||| |||||||||||||| |||| |||||| |   || |    
T  38987873 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataaca 38987972  T
Q  366 gcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggat 465  Q
    |||  |||||||||||||| ||||  | |  ||| || |   ||| ||  |  |||   ||  ||||||||| ||||||||||||| |||||||| |       
T  38987973 gcagcctaccgaaatccaaacaaccactacacatatgacgggcccttcgtagacccccctaccagaccttttgatccattggaggacttgcttgacg--- 38988069  T
Q  466 gatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaa 536  Q
    ||||||||| | || |||||||||||| ||||||| |||||||||||||||  |||||||||||| |||||    
T  38988070 gatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataacaacaacaa 38988140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 266 - 536
Target Start/End: Original strand, 39726592 - 39726863
Alignment:
Q  266 gaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaaga 365  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||| || ||| |||||||||||||| |||| |||||| |   || |    
T  39726592 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttcaagataaca 39726691  T
Q  366 gcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggat 465  Q
    |||  |||||||||||||| ||||  | |  ||| || |   ||| ||  |  |||   ||  ||||||||| ||||||||||||| |||||||| ||||    
T  39726692 gcaccctaccgaaatccaaacaaccactacacatatgacgggcccttcgtagacccccctatcagaccttttgatccattggaggacttgcttgacggat 39726791  T
Q  466 gat-gatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataacaaaaacaa 536  Q
    |||  | ||| |||| |||||||||||| ||||| | |||||||||||||||  ||||||||| || |||||    
T  39726792 gatctagctagttactagcttaaacaaaaatcacctttgttgatgttttgtttgttccaataataacaacaa 39726863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 266 - 513
Target Start/End: Original strand, 39879988 - 39880232
Alignment:
Q  266 gaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaaga 365  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||| || ||| |||||||| || |||||||| |||||  |  ||||    
T  39879988 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaaaacactaaactcatcttcagcgtaaga 39880087  T
Q  366 gcaatctaccgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggat 465  Q
    |||  ||||||| ||| ||||||  || |  ||| ||     ||| |||||  |||   ||  |||||||||| |||||||||||| |||||||| |       
T  39880088 gcagcctaccgagatcaaaccaaaagctacacatatgatgggcccttcagaatcccccctaccagacctttttttccattggaggacttgcttgacg--- 39880184  T
Q  466 gatgatctacttacaagcttaaacaaacatcacttctgttgatgtttt 513  Q
    ||||||||| |||| |||||||||||| ||||||| ||||||||||||    
T  39880185 gatgatctagttactagcttaaacaaaaatcacttttgttgatgtttt 39880232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 646 - 726
Target Start/End: Original strand, 40418870 - 40418950
Alignment:
Q  646 agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccattt 726  Q
    ||||||||||| ||||||| ||||||||||  |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  40418870 agaacaagttacgtgtgttgatcgtgcttcacaaaccatgcctgtcattatattcggcataaaaagttcctttcaccattt 40418950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 39169041 - 39169098
Alignment:
Q  284 tgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagac 341  Q
    |||| ||| ||||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  39169041 tgttgagggtaagtgggaatctgattatcaactctttttaaaagatctacaacaagac 39169098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 635
Target Start/End: Complemental strand, 1163302 - 1163270
Alignment:
Q  603 cgataacaagaacaacttactttgttgcaattt 635  Q
    |||||||||||||||||||||||||||||||||    
T  1163302 cgataacaagaacaacttactttgttgcaattt 1163270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 646 - 690
Target Start/End: Original strand, 38988292 - 38988336
Alignment:
Q  646 agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgt 690  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||    
T  38988292 agaacaagttatgtgtgttgatcttgcttcccaaaccatgcctgt 38988336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 658 - 726
Target Start/End: Original strand, 39880427 - 39880495
Alignment:
Q  658 gtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccattt 726  Q
    ||||||| ||| ||||||| ||| |||| |||||| |||||| |||||| |||||| ||||||||||||    
T  39880427 gtgtgttgatcttgcttcccaaaacatgtctgtcaatatattcggcataaaaagttactttcaccattt 39880495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 40102314 - 40102213
Alignment:
Q  108 gttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgaccatgctcttggttatg 207  Q
    ||||||||||| |||||| ||||||| |||  ||| |  ||| | |||||||||||||| |||  | |||| |||  ||||||||||||| |||||||||    
T  40102314 gttgctcgtgtgaaagattttggaaagaatgacacgagatttaatatcaagactcatctgggttatcttttgaaatttggtgaccatgcttttggttatg 40102215  T
Q  208 ac 209  Q
    ||    
T  40102214 ac 40102213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 7e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 25912422 - 25912292
Alignment:
Q  85 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 184  Q
    |||||||||||||| |||   | ||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||| |||||||    
T  25912422 aatatcgtttagctgatgatgtggttgctcgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattctaaaacc 25912323  T
Q  185 tggtgaccatgctcttggttatgacctgtct 215  Q
     | ||||||||||||||||||||||||||||    
T  25912322 cgatgaccatgctcttggttatgacctgtct 25912292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 229 - 349
Target Start/End: Complemental strand, 25912239 - 25912122
Alignment:
Q  229 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaaga 328  Q
    |||||||||| ||||||||||||| |||  |||||   ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||  |    
T  25912239 ccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaatta 25912143  T
Q  329 tttacaacaagaccctaaact 349  Q
    | |||| ||||||||||||||    
T  25912142 tctacagcaagaccctaaact 25912122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 44444838 - 44444772
Alignment:
Q  143 aacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgaccatgctcttggttatgac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44444838 aacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatgac 44444772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 429 - 536
Target Start/End: Complemental strand, 25912046 - 25911942
Alignment:
Q  429 agacctttttatccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaataac 528  Q
    |||||||||  |||||||||||| |||||||| |||||||   ||| |||| |||||||||||| ||||||| |||||||||||||||  |||||||||     
T  25912046 agaccttttgttccattggaggacttgcttgacggatgat---ctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataat 25911950  T
Q  529 aaaaacaa 536  Q
    || |||||    
T  25911949 aacaacaa 25911942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 425 - 536
Target Start/End: Complemental strand, 44444543 - 44444435
Alignment:
Q  425 tagaagacctttttatccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctgttgatgttttgttacttccaa 524  Q
    ||||||| |||||  |||||| ||||| |||||||| |||||||   ||| ||||||||||||||||| ||||||| |||||||||||||||   |||||    
T  44444543 tagaagatcttttgttccattagaggacttgcttgacggatgat---ctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaa 44444447  T
Q  525 taacaaaaacaa 536  Q
    |||| |||||||    
T  44444446 taacgaaaacaa 44444435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 646 - 726
Target Start/End: Complemental strand, 25911775 - 25911695
Alignment:
Q  646 agaacaagttatgtgtgtttatcgtgcttccgaaaccatgcctgtcattatatttggcatataaagttcctttcaccattt 726  Q
    ||||||||||| ||||||| ||| ||||||| |||||||| ||||||||||||| |||||| ||| |||||||||| ||||    
T  25911775 agaacaagttacgtgtgttgatcatgcttcccaaaccatgtctgtcattatattcggcataaaaaattcctttcactattt 25911695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 43996488 - 43996522
Alignment:
Q  175 ttttaaaacctggtgaccatgctcttggttatgac 209  Q
    ||||||| |||||||||||||||||||||||||||    
T  43996488 ttttaaagcctggtgaccatgctcttggttatgac 43996522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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