View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0839_low_20 (Length: 346)

Name: NF0839_low_20
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0839_low_20
NF0839_low_20
[»] chr3 (1 HSPs)
chr3 (104-255)||(43387077-43387229)
[»] chr8 (1 HSPs)
chr8 (133-215)||(38400334-38400416)
[»] chr4 (1 HSPs)
chr4 (117-182)||(38301540-38301605)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 104 - 255
Target Start/End: Original strand, 43387077 - 43387229
Alignment:
Q  104 cattgactaagagtaatt-accttgagtatggactattcttgacagacttctttccatacttcctccatttgtatccatcatccataatctcaagctgcg 202  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43387077 cattgaccaagagtaatttaccttgggtatggactattcttgacagacttctttccatacttcctccatttgtatccatcatccataatctcaagctgcg 43387176  T
Q  203 atctcgttctaaacgtaacccttgggctcacatctactgtattttccttcatc 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43387177 atctcgttctaaacgtaacccttgggctcacatctactgtattttccttcatc 43387229  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 38400334 - 38400416
Alignment:
Q  133 ggactattcttgacagacttctttccatacttcctccatttgtatccatcatccataatctcaagctgcgatctcgttctaaa 215  Q
    ||||| ||||| || |||||||| || ||||||||||| ||||||||||||||||||||||||||||  ||||| ||||||||    
T  38400334 ggactgttcttcacggacttcttcccgtacttcctccacttgtatccatcatccataatctcaagctctgatcttgttctaaa 38400416  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Complemental strand, 38301605 - 38301540
Alignment:
Q  117 taattaccttgagtatggactattcttgacagacttctttccatacttcctccatttgtatccatc 182  Q
    ||||||||| | ||||||||||||||| ||||  |||| |||||| || |||||| ||||||||||    
T  38301605 taattacctagggtatggactattcttaacagctttctgtccatattttctccatctgtatccatc 38301540  T

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