View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0839_low_22 (Length: 340)
Name: NF0839_low_22
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 32647159 - 32647471
Alignment:
| Q |
7 |
aaaaagagaattagagtgaaggaaaatacttggtgtgatttgttatatggatggtgttccttatatatagaccaaaaagcaaaagctaaagtaattgaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32647159 |
aaaaagagaattagagtgaaggaaaatacttggtgtgatttgttatatggatggtgttccttatatatagaccaaaaagcaaaagctaaagtaattgaat |
32647258 |
T |
|
| Q |
107 |
tgcacaattatacctatgaaagttgagtttaggtgagcatgcaatccttgttgtgtttgtgactaaaactatgtgtcaatcaatattgcgtgtttgtata |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32647259 |
tgcacaattatacctatgaaagttgagtttaggtgagcatgcaatccttgttgtgtttgtgactaaaactatgtgtcaatcaatattgcgtgtttgtata |
32647358 |
T |
|
| Q |
207 |
agtttattacgaagcactcactcactaaatacagtgttacttgtttgttaacataaaaaattagtttagactgaactttagaaaaagaaaagaacaaata |
306 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32647359 |
agtttattacgaagcactc-----------acagtgttacttgtttgttaacataaaaaattagtttagactgaactttagaaaaagaaaagaacaaata |
32647447 |
T |
|
| Q |
307 |
aatactataacaataagagaataa |
330 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
32647448 |
aatactataacaataagagaataa |
32647471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 3520615 - 3520528
Alignment:
| Q |
11 |
agagaattagagtgaaggaaaa-tacttggtgtgatttgttatatggatggtgttccttatatatagaccaaaaagcaaaagctaaagta |
99 |
Q |
| |
|
||||||||||||||||| |||| | ||||||| ||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
3520615 |
agagaattagagtgaagaaaaaatgcttggtgg--tttgttatagggatggtgctccttctatatacaccaaaaagcaaaagctaaagta |
3520528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1710 times since January 2019
Visitors: 6149