View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_23 (Length: 323)
Name: NF0839_low_23
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 313
Target Start/End: Complemental strand, 14965343 - 14965062
Alignment:
| Q |
30 |
tgttcatcacgtcattttctctaagtagtttcaaatgtgtgcatttgtgaaattctcacactattttattggagattatatcatttgattctcctctgtc |
129 |
Q |
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| T |
14965343 |
tgttcatcacgtcgttttctctaagtagtttcaaatgtgtgcatttatgaaattctcac--tattttattggagattatatcatttgattctcctctgtc |
14965246 |
T |
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| Q |
130 |
tctgtttgtcaccaaaaggtaggctttttggagtttgtcaaacctaaccaaacatatacaaatcaacaaagaaaatgaccccatatgcgataataattaa |
229 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14965245 |
tctgtttgttaccaaaaggtaggctttttggagtttatcaaacctaaccaaacatatacaaatcaacaaagaaaatgaccccatatgcgataataattaa |
14965146 |
T |
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| Q |
230 |
tagtgattaatcttatagtattaatagtagttgtaatacaaagatgacatataatcataaatttaagagttagaactagtataa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14965145 |
tagtgattaatcttatagtattaatagtagttgtaatagaaagatgacatataatcataaatttaagagttggaactagtataa |
14965062 |
T |
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