View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_27 (Length: 322)
Name: NF0839_low_27
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 77 - 264
Target Start/End: Original strand, 45893088 - 45893275
Alignment:
| Q |
77 |
atgaaagaaaagagcaaagttacataacaaaagtgaactaaataggtgcnnnnnnntcatgcaagcagttggtaacagattgaaacctgagctgtgtatg |
176 |
Q |
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| T |
45893088 |
atgaaagaaaagagcaaagttacataacaaaagtgaactaaataggtgcaaaaaaatcatgcaagcagttggtaacagattgaaacctgagctgtgtatg |
45893187 |
T |
|
| Q |
177 |
agactagcgcaaaacggagggcatcagcgccacattcctcaataccatttggaaagtccttcttctgaccctctatggcaacagctag |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45893188 |
agactagcgcaaaacggagggcatcagcgccacattcctcaataccatttggaaagtccttcttctgaccctctatggcaacagctag |
45893275 |
T |
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