View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_29 (Length: 320)
Name: NF0839_low_29
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_29 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 48 - 309
Target Start/End: Complemental strand, 6307913 - 6307659
Alignment:
| Q |
48 |
atataatcgtacgtggttcctactaaataggtattagtggaatggttcaaggaagttactacgtgatggccnnnnnnnnnnnnnnnnnnnnnngtatatg |
147 |
Q |
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| T |
6307913 |
atataatcgtacgtggttcctactaaataggtattagtggaatggttcaaggaagttactaagtgatggccagataaaaataaataaataaaagtatatg |
6307814 |
T |
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| Q |
148 |
gagaagtaataggaactgatcttaatccccgaagcatcctattcaaatttcaagcaagctatccactataaaattggttgagtggaattagacaaagtca |
247 |
Q |
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| T |
6307813 |
gagaagtaataggaactgatcttaatccccgaagcatcctattcaa-------gcaagctatccactataaaattggtttagtggaattagacaaagtca |
6307721 |
T |
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| Q |
248 |
aacacaaaatagagaaaagcaacaaatattattgattgaataattttcccacaatattcttc |
309 |
Q |
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| T |
6307720 |
aacacaaaatagagaaaagcaacaaatattattgattaaatagttttccaacaattttcttc |
6307659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 107815 - 107776
Alignment:
| Q |
9 |
atagaataggaaaagtgctccctctgggtgttccacgaaa |
48 |
Q |
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| T |
107815 |
atagaataggaaaagtgctacctctaggtgttccacgaaa |
107776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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