View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0839_low_34 (Length: 312)
Name: NF0839_low_34
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 49842670 - 49842819
Alignment:
| Q |
30 |
cacggaagacataagaaaaggataaatgacggcataagaacatccaatagagtgacatgttgtggtttatgtgaatgcgagtaataataattaggatcat |
129 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49842670 |
cacggaagatataagaaaaggataaatgacggcataagaacatccaatagagtggtatgttgtggtttatgtgaatgcgagtaataataattaggatcgt |
49842769 |
T |
|
| Q |
130 |
tcctaagattttaggagcaccgtgtaaatttagaaaataatatccttaat |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49842770 |
tcctaagattttaggagcaccgtgtaaatttagaaaataatatccttaat |
49842819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 179 - 305
Target Start/End: Original strand, 49842872 - 49842997
Alignment:
| Q |
179 |
ttatgattaagatttttaaaaatttattattgatgattgtcaacgtaaaattcgttagtttatcttctgaaatattaaattgtagataaaaatttaacaa |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
49842872 |
ttatgattaagatttttaaaaatttattattgatgattgtcaacgtaaa-ttcgttagtttatcttctgaaatattaaattgcagataaaaatataacaa |
49842970 |
T |
|
| Q |
279 |
tttaaatttataaaagctcctatgata |
305 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
49842971 |
tttaaatttataaaagctcctatgata |
49842997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1691 times since January 2019
Visitors: 6149