View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0839_low_38 (Length: 292)
Name: NF0839_low_38
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_38 |
 | |
|
| [»] scaffold0459 (1 HSPs) |
| | |
|
| [»] scaffold0366 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0459 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 6386 - 6131
Alignment:
| Q |
9 |
agcatagggaagaaagctagcaactctgaaatatatggaatgatgcaagcagtgtttatagaaatggataatgatcctaatgtaagcctacgccttctga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6386 |
agcatagggaagaaagctagcaactctgaaatatatggaatgatgcaagcagtgtttatagaaatggataatgatcctaatgtaagcctacgccttctga |
6287 |
T |
|
| Q |
109 |
tcctcttatccttttgccaataaatatattcagcaattgttttatgttttttattatatgttcatattatattctgatctttgccctgtcctataaaatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6286 |
tcctcttatccttttgccaataaatatattcagcaattgttttatgttttttattatatgttcatattatattctgatctttgccctgtcctataaaatt |
6187 |
T |
|
| Q |
209 |
cttgctccgaacctgctatcatggagatcaaacacgacacgaataataactaaatt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6186 |
cttgctccgaacctgctatcatggagatcaaacacgacacgaataataactaaatt |
6131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 6386 - 6131
Alignment:
| Q |
9 |
agcatagggaagaaagctagcaactctgaaatatatggaatgatgcaagcagtgtttatagaaatggataatgatcctaatgtaagcctacgccttctga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6386 |
agcatagggaagaaagctagcaactctgaaatatatggaatgatgcaagcagtgtttatagaaatggataatgatcctaatgtaagcctacgccttctga |
6287 |
T |
|
| Q |
109 |
tcctcttatccttttgccaataaatatattcagcaattgttttatgttttttattatatgttcatattatattctgatctttgccctgtcctataaaatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6286 |
tcctcttatccttttgccaataaatatattcagcaattgttttatgttttttattatatgttcatattatattctgatctttgccctgtcctataaaatt |
6187 |
T |
|
| Q |
209 |
cttgctccgaacctgctatcatggagatcaaacacgacacgaataataactaaatt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6186 |
cttgctccgaacctgctatcatggagatcaaacacgacacgactaataactaaatt |
6131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2988 times since January 2019
Visitors: 6168