View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_4 (Length: 676)
Name: NF0839_low_4
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 135 - 668
Target Start/End: Original strand, 21592352 - 21592882
Alignment:
| Q |
135 |
cttcccatcgagcattatcagttgtaagctgagataatttcttgctttgagaaagggacatcttagtgccatctcttcggaccaatcttttggccaactt |
234 |
Q |
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| T |
21592352 |
cttcccatcgagcattatcagt---aagctgagataatttcttgctttgagaaagggacatcttagtgccatctcttcggaccaatcttttggccaactt |
21592448 |
T |
|
| Q |
235 |
ggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcctctctatcataccatgcttga |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21592449 |
ggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcctctctatcataccatgctcgg |
21592548 |
T |
|
| Q |
335 |
tctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatttcctcctcatctgaag |
434 |
Q |
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| T |
21592549 |
tctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatttcctcctcatctgaag |
21592648 |
T |
|
| Q |
435 |
aaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgcgtgaagagccagaagcccgtattggaaaaggagacggagaaacatgatc |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21592649 |
aaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgtgtgaagagccagaagcccgtattggaaaaggagacggagaaacatgatc |
21592748 |
T |
|
| Q |
535 |
caaaggagaaagtgaattaaaggacgaacaaggagtatgccatggagtttcttccctttgaggagcatcttcccattcccatcggcgattgtgcaagtca |
634 |
Q |
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| T |
21592749 |
caaaggagaaagtgaattaaaggacgaacaaggagtatgccatggagtttcttccctttgaggagcatcttcccattcccatcggcgattgtgcaagtca |
21592848 |
T |
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| Q |
635 |
tatctgttaggctttctccttgaaccttcatatc |
668 |
Q |
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| T |
21592849 |
tatctgttaggctttctccttgaaccttcatatc |
21592882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 321 - 425
Target Start/End: Complemental strand, 42095475 - 42095371
Alignment:
| Q |
321 |
cataccatgcttgatctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatttc |
420 |
Q |
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| T |
42095475 |
cataccatgctcggtctgcatcatattccatctcttgacgcatgctttcagtaatctcatacttgtgttcttcacccaagtcagatttatctgctatttc |
42095376 |
T |
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| Q |
421 |
ctcct |
425 |
Q |
| |
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||||| |
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| T |
42095375 |
ctcct |
42095371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 428 - 553
Target Start/End: Complemental strand, 42095259 - 42095134
Alignment:
| Q |
428 |
tctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgcgtgaagagccagaagcccgtattggaaaaggagacggagaaa |
527 |
Q |
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||||||||||| || ||||||||| | |||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||| |
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| T |
42095259 |
tctgaagaaaaggcaagtttatgcgaccttcgattatatccagaaacagaagatttgactgaagagccggaagctcgtattggaacaggagacggagaaa |
42095160 |
T |
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| Q |
528 |
catgatccaaaggagaaagtgaatta |
553 |
Q |
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|||| ||| |||||||| |||||||| |
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| T |
42095159 |
catggtcccaaggagaaggtgaatta |
42095134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 215 - 326
Target Start/End: Complemental strand, 42095685 - 42095574
Alignment:
| Q |
215 |
accaatcttttggccaacttggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcct |
314 |
Q |
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|||| |||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||| || ||||||| |
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| T |
42095685 |
accagtcttttggccaactcggcctcctttttctgaaatgaagcctcatctccaagaaaaagtgaagagctatcagaatcaaacaatgcgctgccttcct |
42095586 |
T |
|
| Q |
315 |
ctctatcatacc |
326 |
Q |
| |
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|||||||||||| |
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| T |
42095585 |
ctctatcatacc |
42095574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 42096591 - 42096509
Alignment:
| Q |
135 |
cttcccatcgagcattatcagttgtaagctgagataatttcttgctttgagaaagggacatcttagtgccatctcttcggacc |
217 |
Q |
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|||||||| |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42096591 |
cttcccattgagcattatccgctgtaagctgagacaatttcttgctttgagaaagggacatcttagtcccatctcttcggacc |
42096509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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