View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_40 (Length: 290)
Name: NF0839_low_40
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 16953662 - 16953945
Alignment:
| Q |
7 |
tccaacaatattaataaaaccacacatgtacccatctaatacattattgtcactattatcaattttccctaacgaactttattttaagtaccctctctcc |
106 |
Q |
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| T |
16953662 |
tccaacaaaattaataaaaccacacatgtacccatctaatacattattgtcactattatcaattttccctaacgaactttattttaagtaccctctctcc |
16953761 |
T |
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| Q |
107 |
ccaaacattgatctcatacaaattatgttttaacaaaacaaagtcttctaatataaacttaatcatctcaaaaatcttagcattcatcagaagaacatcc |
206 |
Q |
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| T |
16953762 |
ccaaacattgatctcatacaaattatgttttaacaaaacaaagtcttctaatataaacttaatcatctcaaaaatcttagcattcatcagaagaacatcc |
16953861 |
T |
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| Q |
207 |
attaagtaagccagaagataaagccatgagtagaatagcagcctccttcacatcttgagggaaaacttgatgggaagccaagtt |
290 |
Q |
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| T |
16953862 |
attaagtaagccagaagataaagccatgagtagaatagcagcctccttcacatcttgagggaaaacttgatgggaagccaagtt |
16953945 |
T |
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