View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_41 (Length: 290)
Name: NF0839_low_41
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 36601571 - 36601316
Alignment:
| Q |
1 |
ttcatgttcaccgaaaatgagtggttattctaatcttaaatgtgtgacaataaagtagtattcacttgtgagctatggtgttttaggattgccatataat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
36601571 |
ttcatgttcaccgaaaatgagtggttattctaatctttaatgtgtgacaataaagtagtagtcactt--------------tttaggattgccatataat |
36601486 |
T |
|
| Q |
101 |
ttgaattaagggttaatatgcctttagcggaatcttattctgctgttaataatgaattttacctatagtctgtgctaacaattcacaagctagaatataa |
200 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36601485 |
ttgaattaagggttaatatgcttttaggggaatcttattctgctgttaataatgaattttacctatagtccttgctaacaattcacaagctagaatataa |
36601386 |
T |
|
| Q |
201 |
agttcttcgatgccctaataaaagccatcatttgaaaacaaaccacataccggctgtttagaatggcagtt |
271 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36601385 |
agttcttcgatg-cctaataaaagccatcatttgaaaacaaaccacataccggctgtttagaacggcagtt |
36601316 |
T |
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