View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0839_low_42 (Length: 289)
Name: NF0839_low_42
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 26175596 - 26175707
Alignment:
| Q |
159 |
tgcttgacttgattatttactggtagaggaatcttgtactttatttcattgttgagaataaggtatagatctaccagaggatagttcgtttacacatttt |
258 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26175596 |
tgcttgacttgattatttac-ggtagaggaatcttgtactttatttcattgttgagaataaggtacagatctaccagaggatagttcgtttacacatttt |
26175694 |
T |
|
| Q |
259 |
tattttgattctt |
271 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26175695 |
gattttgattctt |
26175707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 26175412 - 26175549
Alignment:
| Q |
35 |
acctgcagatagtttttctcttgataaattttcatgcagattttcctg---catagtttgctgcagatatacctgcaagtatgttcgcaggaaaaactct |
131 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| | | |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26175412 |
acctgcagattgtttttctcttgataaagtttcttacggattttcctgatgcatagtttgctgcagaagtacctgcaagtatgttcgcaggaaaaactct |
26175511 |
T |
|
| Q |
132 |
acatacagtgacttaccgaatatttcctgcttgacttg |
169 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26175512 |
acaaacagtgacttaccgaatatttcctgcttgacttg |
26175549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 26125543 - 26125654
Alignment:
| Q |
159 |
tgcttgacttgattatttactggtagaggaatcttgtactttatttcattgttgagaataaggtatagatctaccagaggatagttcgtttacacatttt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
26125543 |
tgcttgacttgattatttactggtagaggaatgttgtactttatttcattgttgagaataaggtatagatctatcaga-tatagttcgtttacacatttt |
26125641 |
T |
|
| Q |
259 |
tattttgattctt |
271 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26125642 |
gattttgattctt |
26125654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 36320129 - 36320190
Alignment:
| Q |
64 |
tttcatgcagattttcctgcatagtttgctgcagatatacctgcaagtatgttcgcaggaaa |
125 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||| || |||||||||||||| |||||| |||| |
|
|
| T |
36320129 |
tttcatgcggattctcctgcgtagtttgctgccgaaatacctgcaagtatattcgcaagaaa |
36320190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2140 times since January 2019
Visitors: 6159