View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_43 (Length: 289)
Name: NF0839_low_43
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 28 - 284
Target Start/End: Complemental strand, 83705 - 83449
Alignment:
| Q |
28 |
cattgatgccatagcttgagccattttttgactttctttgtagagaactatagaagaatgtgtttatgacaataaacaagtaatggatgaaaaggtttaa |
127 |
Q |
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| T |
83705 |
cattgatgccatagcttgagccattttttgactttctttgtagagaactatagaagaatgtgtttatgacaataaacaagtaatggatgaaaaggtttaa |
83606 |
T |
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| Q |
128 |
gatatatgaatatgatgattgttctgtgtgtgattgtaagtcattaccttatctaacattttccacttggataagttggatcatgtttcaaccaatcata |
227 |
Q |
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| T |
83605 |
gatatatgaatatgatgattgttctgtgtgtgattgtaagtcattaccttatctaacattttccacttggataagttggatcatgtttcaaccaatcata |
83506 |
T |
|
| Q |
228 |
tgtgtttgtaacatcttattgcttgattgtgtttccaccctggattttcatctcact |
284 |
Q |
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| T |
83505 |
tgtgtttgtaacatcttattgcttgattgtgtttccaccctggatttttatctcact |
83449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 40636495 - 40636450
Alignment:
| Q |
137 |
atatgatgattgttctgtgtgtgattgtaagtcattaccttatcta |
182 |
Q |
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| T |
40636495 |
atatgatgattgttgtgtgtgtgattgtgagtaattaccttatcta |
40636450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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