View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0839_low_46 (Length: 281)
Name: NF0839_low_46
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_46 |
 | |
|
| [»] scaffold0149 (1 HSPs) |
| | |
|
| [»] scaffold0436 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0670 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0149 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 36716 - 36916
Alignment:
| Q |
42 |
ataggtaggttaaatgcacggataagatgaaggatgaagtacgtcactaggagtaaaagatgcagagaatgaaaatcaaactaatggtgggtgtaagatt |
141 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36716 |
ataggtaggtttaatgcatggataagatgaaggatgaagtatgtcactatgagtaaaatatgcagagaatgaaaatcaaactaatggtgggtgtaagatt |
36815 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatgatg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36816 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatgatg |
36915 |
T |
|
| Q |
242 |
t |
242 |
Q |
| |
|
| |
|
|
| T |
36916 |
t |
36916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 24495459 - 24495259
Alignment:
| Q |
42 |
ataggtaggttaaatgcacggataagatgaaggatgaagtacgtcactaggagtaaaagatgcagagaatgaaaatcaaactaatggtgggtgtaagatt |
141 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495459 |
ataggtaggtttaatgcatggataagatgaaggatgaagtatgtcactaggagtaaaagatgctgagaatgaaaatcaaactaatggtgggtgtaagatt |
24495360 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatgatg |
241 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24495359 |
taaatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgatgtaagatgatgatg |
24495260 |
T |
|
| Q |
242 |
t |
242 |
Q |
| |
|
| |
|
|
| T |
24495259 |
t |
24495259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 23450346 - 23450145
Alignment:
| Q |
42 |
ataggtaggttaaatgcacggataagatgaaggatgaagtacgtcactaggagtaaaagatgcagagaatgaaaatcaaactaatggtgggtgtaagatt |
141 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23450346 |
ataggtgggttaaatggacggataagatgaaggatgaagtatgtcactaagagtaaaaaatgcaaagaatgaaaattaaactaatggtgggtgtaagatt |
23450247 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgt-aaaataatgatgaattgctaatgatgtaagatgatgat |
240 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
23450246 |
tagatatgacgtgaatatgacaaaattaagagttagacataagtagacgaatatatggtgtaaaaataatgatgagttgctaatgacgtaagatgatgat |
23450147 |
T |
|
| Q |
241 |
gt |
242 |
Q |
| |
|
|| |
|
|
| T |
23450146 |
gt |
23450145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 23844876 - 23844676
Alignment:
| Q |
42 |
ataggtaggttaaatgcacggataagatgaaggatgaagtacgtcactaggagtaaaagatgcagagaatgaaaatcaaactaatggtgggtgtaagatt |
141 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23844876 |
ataggtgggttaaatgaacgaataagatgaaggatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagatt |
23844777 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatgatg |
241 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
23844776 |
tagatatgatgtaaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatgatg |
23844677 |
T |
|
| Q |
242 |
t |
242 |
Q |
| |
|
| |
|
|
| T |
23844676 |
t |
23844676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 24431474 - 24431674
Alignment:
| Q |
42 |
ataggtaggttaaatgcacggataagatgaaggatgaagtacgtcactaggagtaaaagatgcagagaatgaaaatcaaactaatggtgggtgtaagatt |
141 |
Q |
| |
|
|||||| |||||| || ||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
24431474 |
ataggtgggttaagtgaacggataagatgaaggatgaaatatgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagaat |
24431573 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatgatg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
24431574 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacataagatgatgatg |
24431673 |
T |
|
| Q |
242 |
t |
242 |
Q |
| |
|
| |
|
|
| T |
24431674 |
t |
24431674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 23210791 - 23210991
Alignment:
| Q |
42 |
ataggtaggttaaatgcacggataagatgaaggatgaagtacgtcactaggagtaaaagatgcagagaatgaaaatcaaactaatggtgggtgtaagatt |
141 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||||||||| ||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23210791 |
ataggtgggttaaatgaacgaataagatgaaggatgaagtgtgtcacaaggagtaaaagaagaagagaatgaaaattaaactaatggtgggtgtaagatt |
23210890 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatgatg |
241 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
23210891 |
tagatgtgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatgatg |
23210990 |
T |
|
| Q |
242 |
t |
242 |
Q |
| |
|
| |
|
|
| T |
23210991 |
t |
23210991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 32410581 - 32410381
Alignment:
| Q |
42 |
ataggtaggttaaatgcacggataagatgaaggatgaagtacgtcactaggagtaaaagatgcagagaatgaaaatcaaactaatggtgggtgtaagatt |
141 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32410581 |
ataggtgggttaaatgaacgaataagatgaaggatgaagtgtgccaccaggagtaaaagatgcagagaatgaaaattaaactaatggtgggtgtaagatt |
32410482 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatgatg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
32410481 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatgatg |
32410382 |
T |
|
| Q |
242 |
t |
242 |
Q |
| |
|
| |
|
|
| T |
32410381 |
t |
32410381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0436 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0436
Description:
Target: scaffold0436; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 881 - 1081
Alignment:
| Q |
42 |
ataggtaggttaaatgcacggataagatgaaggatgaagtacgtcactaggagtaaaagatgcagagaatgaaaatcaaactaatggtgggtgtaagatt |
141 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
881 |
ataggtgggttaaaagaacggataagatgaaggatgaagtgtgtcactaggagtaaaagacgcagagaatgaaaattaaactaatggtgggtgtaagatt |
980 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatgatg |
241 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
981 |
tatatatgatgtgaatatgccaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgagtcgctaatgacgtaagatgatgatg |
1080 |
T |
|
| Q |
242 |
t |
242 |
Q |
| |
|
| |
|
|
| T |
1081 |
t |
1081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 23844886 - 23845086
Alignment:
| Q |
42 |
ataggtaggttaaatgcacggataagatgaaggatgaagtacgtcactaggagtaaaagatgcagagaatgaaaatcaaactaatggtgggtgtaagatt |
141 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||| |||| | ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23844886 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcagtgggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagatt |
23844985 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatgatg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
23844986 |
tagatatgatgtgaatatgacaaaattatgagttagacataggtagacgaatatatggtgtaaaataattatgagttgctaatgacgtaagatgatgatg |
23845085 |
T |
|
| Q |
242 |
t |
242 |
Q |
| |
|
| |
|
|
| T |
23845086 |
t |
23845086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 18544653 - 18544742
Alignment:
| Q |
153 |
tgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatgatgt |
242 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
18544653 |
tgaatatgacaaaattatgagttagtcataagtagacaaatatatgatgtaaattaatgatgagttgctaatgacgtaagatgatgatgt |
18544742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 50 - 242
Target Start/End: Complemental strand, 12057070 - 12056879
Alignment:
| Q |
50 |
gttaaatgcacggataagatgaaggatgaagtacgtcactaggagtaaaagatgcagagaatgaaaatcaaactaatggtgggtgtaagatttagatatg |
149 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12057070 |
gttaaatgaacggatatgatgaaggatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaattaaactaatggtgggtgtaagatttagatat- |
12056972 |
T |
|
| Q |
150 |
atgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatgatgt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12056971 |
atgtgaatatgacaaaattatgagttagacataagtagacaaatatatggtgtaaaataatgatgaattgctaatgacgtaagatgatgatgt |
12056879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 13296298 - 13296217
Alignment:
| Q |
158 |
atgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatga |
239 |
Q |
| |
|
||||||| || |||| |||||| |||||||||||||||||||||||| | ||||||| |||||||||| ||||||| |||| |
|
|
| T |
13296298 |
atgacaagatgatgacttagacttaagtagacgaatatatggtgtaagttgatgatgagttgctaatgacgtaagataatga |
13296217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 42 - 237
Target Start/End: Original strand, 12191 - 12386
Alignment:
| Q |
42 |
ataggtaggttaaatgcacggataagatgaaggatgaagtacgtcactaggagtaaaagatgcagagaatgaaaatcaaactaatggtgggtgtaagatt |
141 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| | |||| |
|
|
| T |
12191 |
ataggtgggttaaatgaacggataagatgaaggatgaagtgtgtcactaggagtaaaagatgtagagaatgaaaactaaactaatggtgggtgaacgatt |
12290 |
T |
|
| Q |
142 |
tagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| || ||||||| |||||||||| |
|
|
| T |
12291 |
tagatatgatgtgaatatgacaaaattatgagttagaaatgagtagacgaatatatggtataaaataatgatgagtttctaatgacgtaagatgat |
12386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 16478335 - 16478173
Alignment:
| Q |
78 |
aagtacgtcactaggagtaaaagatgcagagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattatgagttag |
177 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
16478335 |
aagtatgtcactaggagtaaaatatgcagagaatgaaaattgaactaatggtgggtgtaagatttagatatgatgttaatatgacaa--ttatgagttag |
16478238 |
T |
|
| Q |
178 |
acataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatgatgt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
16478237 |
acataagtagacgaatatatggtgtaaaataatgatgagttgctaatgacgtaagatgatgatgt |
16478173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 42516 - 42597
Alignment:
| Q |
158 |
atgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatgatgtaagatgatga |
239 |
Q |
| |
|
||||||| || |||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| |||| |
|
|
| T |
42516 |
atgacaagatgatgacttagacttaagtagacgaatatatggtgtaaattaatgatgagttgctaatgacgtaagataatga |
42597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 16481281 - 16481241
Alignment:
| Q |
42 |
ataggtaggttaaatgcacggataagatgaaggatgaagta |
82 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
16481281 |
ataggtgggttaaatgaacggataagatgaaggatgaagta |
16481241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0670 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0670
Description:
Target: scaffold0670; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 5774 - 5701
Alignment:
| Q |
153 |
tgaatatgacaaaattatgagttagacataagtagacgaatatatggtgtaaaataatgatgaattgctaatga |
226 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| |
|
|
| T |
5774 |
tgaacatgacaaaattatgagttagacataagtagacgaatatatggtgtaaattaatgaagagttgctaatga |
5701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2739 times since January 2019
Visitors: 6167