View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0839_low_49 (Length: 277)

Name: NF0839_low_49
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0839_low_49
NF0839_low_49
[»] chr8 (42 HSPs)
chr8 (74-237)||(3085819-3085981)
chr8 (74-237)||(35206267-35206430)
chr8 (74-230)||(39512831-39512986)
chr8 (74-230)||(16939892-16940047)
chr8 (74-230)||(37656214-37656369)
chr8 (78-230)||(13782541-13782692)
chr8 (78-237)||(41471398-41471561)
chr8 (74-229)||(34892221-34892376)
chr8 (74-229)||(36595563-36595716)
chr8 (73-230)||(43520399-43520554)
chr8 (74-230)||(39208035-39208190)
chr8 (74-230)||(38133762-38133917)
chr8 (74-230)||(45410406-45410561)
chr8 (74-230)||(22961123-22961277)
chr8 (143-230)||(36345589-36345675)
chr8 (101-188)||(41471663-41471747)
chr8 (141-237)||(7121422-7121517)
chr8 (101-168)||(7121255-7121322)
chr8 (101-189)||(36595369-36595454)
chr8 (101-188)||(16939717-16939801)
chr8 (101-188)||(22960949-22961033)
chr8 (101-170)||(40741558-40741627)
chr8 (101-188)||(43520223-43520307)
chr8 (101-168)||(35206097-35206164)
chr8 (107-188)||(37656465-37656543)
chr8 (101-168)||(39512675-39512742)
chr8 (101-188)||(34892465-34892549)
chr8 (101-189)||(3086077-3086162)
chr8 (35-80)||(7121594-7121639)
chr8 (35-80)||(34892138-34892183)
chr8 (35-80)||(35206468-35206513)
chr8 (35-80)||(36345740-36345785)
chr8 (35-80)||(43520589-43520634)
chr8 (90-138)||(3641796-3641844)
chr8 (36-80)||(37656132-37656176)
chr8 (90-125)||(7121520-7121555)
chr8 (35-80)||(3085735-3085780)
chr8 (35-80)||(36595754-36595799)
chr8 (35-80)||(38133954-38133999)
chr8 (35-80)||(39208226-39208271)
chr8 (35-80)||(41471312-41471357)
chr8 (35-80)||(45410326-45410371)
[»] scaffold0217 (2 HSPs)
scaffold0217 (74-230)||(9004-9159)
scaffold0217 (35-80)||(8921-8966)
[»] chr4 (24 HSPs)
chr4 (74-230)||(11566155-11566310)
chr4 (74-230)||(28234902-28235057)
chr4 (74-235)||(37856135-37856295)
chr4 (74-230)||(48807002-48807157)
chr4 (74-223)||(37295830-37295979)
chr4 (83-219)||(43176011-43176147)
chr4 (75-230)||(7088314-7088468)
chr4 (75-230)||(16472900-16473054)
chr4 (101-188)||(43176273-43176357)
chr4 (101-188)||(48806826-48806910)
chr4 (101-165)||(7088173-7088237)
chr4 (101-188)||(2449281-2449365)
chr4 (101-168)||(37856398-37856464)
chr4 (180-216)||(6092273-6092309)
chr4 (101-188)||(6092410-6092490)
chr4 (35-81)||(48807192-48807238)
chr4 (35-80)||(16473088-16473133)
chr4 (35-80)||(28235091-28235136)
chr4 (35-80)||(37856053-37856098)
chr4 (90-138)||(43493027-43493075)
chr4 (35-80)||(2449420-2449465)
chr4 (35-80)||(11566072-11566117)
chr4 (35-80)||(43175927-43175972)
chr4 (90-138)||(53536753-53536801)
[»] chr3 (34 HSPs)
chr3 (74-237)||(26494108-26494273)
chr3 (74-230)||(20484936-20485091)
chr3 (74-230)||(45075648-45075803)
chr3 (74-230)||(32592516-32592671)
chr3 (74-230)||(4331137-4331292)
chr3 (74-230)||(32743483-32743638)
chr3 (74-219)||(4274575-4274720)
chr3 (74-230)||(7941621-7941777)
chr3 (78-222)||(11269907-11270051)
chr3 (74-230)||(39999196-39999350)
chr3 (74-230)||(19842804-19842958)
chr3 (74-158)||(10659118-10659202)
chr3 (101-168)||(4274411-4274478)
chr3 (107-188)||(19843057-19843135)
chr3 (107-188)||(32592768-32592846)
chr3 (101-188)||(20485181-20485265)
chr3 (101-188)||(30294589-30294673)
chr3 (101-188)||(45075898-45075982)
chr3 (107-187)||(7941448-7941525)
chr3 (101-188)||(26493922-26494006)
chr3 (101-168)||(31889618-31889685)
chr3 (90-153)||(31890101-31890164)
chr3 (35-80)||(32592433-32592478)
chr3 (35-80)||(32743401-32743446)
chr3 (90-138)||(14043772-14043820)
chr3 (35-80)||(4274758-4274803)
chr3 (35-80)||(19842723-19842768)
chr3 (35-80)||(20484852-20484897)
chr3 (35-80)||(39999387-39999432)
chr3 (90-159)||(48099281-48099350)
chr3 (90-159)||(48103956-48104025)
chr3 (74-102)||(7941520-7941548)
chr3 (90-138)||(34722375-34722423)
chr3 (35-79)||(45075566-45075610)
[»] chr7 (19 HSPs)
chr7 (74-237)||(11886286-11886448)
chr7 (74-237)||(13644951-13645113)
chr7 (74-230)||(30846438-30846593)
chr7 (74-223)||(48000997-48001146)
chr7 (77-237)||(14101958-14102116)
chr7 (77-237)||(14411975-14412133)
chr7 (107-230)||(19073032-19073153)
chr7 (101-168)||(30846281-30846348)
chr7 (101-167)||(11886549-11886615)
chr7 (107-187)||(19073251-19073328)
chr7 (90-168)||(2526669-2526747)
chr7 (101-188)||(14101768-14101856)
chr7 (101-188)||(14411785-14411873)
chr7 (35-80)||(13645150-13645195)
chr7 (35-80)||(19072658-19072703)
chr7 (35-80)||(30846631-30846676)
chr7 (35-80)||(48001183-48001228)
chr7 (101-140)||(13644811-13644850)
chr7 (36-80)||(31512847-31512891)
[»] chr6 (10 HSPs)
chr6 (74-230)||(11159042-11159197)
chr6 (74-229)||(17338396-17338550)
chr6 (74-230)||(26350528-26350683)
chr6 (74-230)||(32396267-32396422)
chr6 (101-230)||(17338179-17338307)
chr6 (143-223)||(35096960-35097040)
chr6 (101-168)||(11158885-11158952)
chr6 (89-161)||(22209474-22209547)
chr6 (89-161)||(22207501-22207574)
chr6 (35-80)||(35096858-35096903)
[»] chr1 (18 HSPs)
chr1 (74-237)||(5329622-5329784)
chr1 (74-223)||(21700178-21700327)
chr1 (74-219)||(42290572-42290716)
chr1 (74-237)||(12627743-12627905)
chr1 (74-230)||(51461359-51461514)
chr1 (74-209)||(7943244-7943379)
chr1 (142-237)||(41909458-41909552)
chr1 (101-188)||(5329436-5329520)
chr1 (101-188)||(51461604-51461689)
chr1 (101-168)||(12627574-12627641)
chr1 (101-188)||(41909273-41909357)
chr1 (101-161)||(44387674-44387734)
chr1 (35-77)||(12627946-12627988)
chr1 (35-80)||(13760897-13760942)
chr1 (35-80)||(41909631-41909676)
chr1 (35-80)||(42290490-42290535)
chr1 (35-80)||(7943162-7943207)
chr1 (90-159)||(9936671-9936740)
[»] chr5 (16 HSPs)
chr5 (74-223)||(35282016-35282165)
chr5 (74-230)||(41622451-41622606)
chr5 (74-230)||(20743604-20743757)
chr5 (74-199)||(35671385-35671510)
chr5 (78-219)||(2170207-2170336)
chr5 (142-237)||(35671514-35671608)
chr5 (101-188)||(41622696-41622780)
chr5 (108-188)||(2170025-2170102)
chr5 (101-168)||(20743448-20743515)
chr5 (112-188)||(35671721-35671794)
chr5 (101-162)||(30192813-30192874)
chr5 (35-80)||(2170378-2170423)
chr5 (35-80)||(41622367-41622412)
chr5 (91-125)||(30966521-30966555)
chr5 (90-138)||(30966240-30966288)
chr5 (36-80)||(42912685-42912729)
[»] chr2 (28 HSPs)
chr2 (74-219)||(23260862-23261007)
chr2 (74-219)||(23265868-23266013)
chr2 (74-230)||(6232908-6233063)
chr2 (74-230)||(37321756-37321911)
chr2 (74-219)||(29407494-29407639)
chr2 (74-219)||(40156807-40156952)
chr2 (74-230)||(2271356-2271510)
chr2 (74-230)||(14002795-14002950)
chr2 (108-237)||(28138945-28139072)
chr2 (101-188)||(28139174-28139258)
chr2 (101-188)||(37294666-37294750)
chr2 (107-188)||(29407311-29407389)
chr2 (101-188)||(1729112-1729196)
chr2 (101-188)||(2271181-2271265)
chr2 (101-188)||(23260681-23260765)
chr2 (74-123)||(28138882-28138931)
chr2 (74-118)||(14003023-14003067)
chr2 (89-151)||(29193775-29193837)
chr2 (35-80)||(2271546-2271591)
chr2 (35-80)||(6232828-6232873)
chr2 (35-80)||(29407677-29407722)
chr2 (89-161)||(44553152-44553225)
chr2 (90-146)||(37893266-37893322)
chr2 (37-80)||(37321945-37321988)
chr2 (101-147)||(23265725-23265771)
chr2 (35-80)||(23266052-23266097)
chr2 (35-80)||(28138801-28138846)
chr2 (36-80)||(28419629-28419673)
[»] scaffold0019 (3 HSPs)
scaffold0019 (74-230)||(127794-127948)
scaffold0019 (101-188)||(128067-128151)
scaffold0019 (35-80)||(127712-127757)
[»] scaffold1379 (1 HSPs)
scaffold1379 (90-138)||(308-356)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 42)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 3085819 - 3085981
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3085819 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 3085918  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3085919 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaacgcaaca 3085981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 35206430 - 35206267
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  35206430 aaatgatagaataattatatttgtaattattagtaattaattttattgatgtctgtcattatttataagtttgactaacctattattactttatattaat 35206331  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35206330 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaatgcaaca 35206267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 39512986 - 39512831
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39512986 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattactttatactaat 39512887  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39512886 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 39512831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 16940047 - 16939892
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16940047 aaatgataaaataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattactttatactaat 16939948  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  ||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  16939947 atttcagatattattactttaattaacatgaaaaatgcaacaacaa-aaaataaaaa 16939892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 37656214 - 37656369
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||    
T  37656214 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctgtaattattcataggtttgattaacctattattactttatactaat 37656313  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37656314 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 37656369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 13782541 - 13782692
Alignment:
Q  78 gatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattt 177  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13782541 gatataataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattactttataataatattt 13782640  T
Q  178 tggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
      |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13782641 cagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 13782692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 78 - 237
Target Start/End: Original strand, 41471398 - 41471561
Alignment:
Q  78 gatagaataattatatttataattattagtaa-----ttaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaa 172  Q
    |||||||||||||||||| ||||||||| |||     || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41471398 gatagaataattatatttgtaattattattaattcatttcatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaa 41471497  T
Q  173 tattttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41471498 tattttagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaacgcaaca 41471561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 34892221 - 34892376
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  34892221 aaataatagaataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgaccaacctattattactttatactaat 34892320  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaa 229  Q
    ||||   ||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  34892321 atttcatatattattactttaattaacatgaaaaacgcaacaacaaaaaattaaaa 34892376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 36595716 - 36595563
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  36595716 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtatgtcat-attcatatgtttgactaacctattattactttatactaat 36595618  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaa 229  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36595617 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaa 36595563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 43520554 - 43520399
Alignment:
Q  73 aaaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaa 172  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  43520554 aaaatgatagaataattatatttgtaattattattaattaatttcattgatgtctgtcattattcataggtttgactgacctattattactttatactaa 43520455  T
Q  173 tattttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    || |||  ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43520454 ta-tttcaatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 43520399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 39208190 - 39208035
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    ||||||||||||||||| ||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  39208190 aaatgatagaataattaaatttataattattagcaatcaatttcattgatgtctgtcattattcatatgtttgactaacctattattactttatactaat 39208091  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  ||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  39208090 atttcagatattattactttaattaacatgaaaaacgcaacaa-aacaaaaaaaaaa 39208035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 38133917 - 38133762
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  38133917 aaatgatagaataattatatttgtaattattagtaactaatttcattgatgtctgtcattattcatatgtttgactaacctattattactttatactaat 38133818  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    |||    ||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  38133817 attacatatattattactttaattaacatgaaaaacacaacaacaa-aaaataaaaa 38133762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 45410406 - 45410561
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||| |||||||||||||||    
T  45410406 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctatcattattcatagatttgactaacccatttttactttatactaat 45410505  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||| | ||| ||||||||||    
T  45410506 atttcagatattattactttaattaacatgaaaaacgcaagagcaa-aaaataaaaa 45410561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 22961277 - 22961123
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||||||||    
T  22961277 aaatgatagaataaatatatttgtaattattaataattaatttcattgatgtccgtcattattcatagatttgactaacttattattactttatactaat 22961178  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    | ||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22961177 a-ttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 22961123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 36345675 - 36345589
Alignment:
Q  143 tttgactaacctattattactttatactaatattttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  36345675 tttgactaacctattattactttatactaatatttcagatattattactttaattaacatgaaaaacacaataacaa-aaaataaaaa 36345589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 41471663 - 41471747
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  41471663 tatttgtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattacttta---taatattttagatattatt 41471747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 7121517 - 7121422
Alignment:
Q  141 ggtttgactaacctattattactttatactaatattttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    ||||||||||||| |||||||||||||| ||||||||  |||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||    
T  7121517 ggtttgactaaccaattattactttatagtaatatttcagatattattactttaattaacatgaaaaattcaacaacaa-aaaataaaatcgcaaca 7121422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 7121322 - 7121255
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttata 168  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7121322 tatttgtaattaatttcattgatgtatgtcattattcataggtttgactaacctattattactttata 7121255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 36595454 - 36595369
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatta 189  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||    
T  36595454 tatttgtaattaatttcattgatgtctctcattattcataggtttgactaacctattattacttta---taatattttagatattatta 36595369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 16939801 - 16939717
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  16939801 tatttgtaattaatttcagtgatgtctgtcattattcataggtttgactaacctattattacttta---taatattttagatattatt 16939717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 22961033 - 22960949
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||   || ||||||||| |||||||||    
T  22961033 tatttgtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattact---tattaatattttagatattatt 22960949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 170
Target Start/End: Complemental strand, 40741627 - 40741558
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatact 170  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  40741627 tatttgtaattaatttcattgatgtctgtcattattcataggtttgactaccctattattactttatact 40741558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 43520307 - 43520223
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  43520307 tatttgtaattaatttcattgatgtctgtcattattaataggtttgactaacctattattacttta---taatattttagatattatt 43520223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 35206164 - 35206097
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttata 168  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  35206164 tattagtaattaattttattgatgtctgtcattattcataggtttgactaacctataattactttata 35206097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 37656465 - 37656543
Alignment:
Q  107 taattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  37656465 taattaatttcattgatgtctgtcattatttataggtttgactaacctattattacttta---taatattttagatattatt 37656543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 39512742 - 39512675
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttata 168  Q
    |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  39512742 tatttgtaattaatttcattgatgtctgtcatgattcataggtttgactaacctattattactttata 39512675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 34892465 - 34892549
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||   ||||||||| |||||||||    
T  34892465 tatttgtaattaattttattgatgtatgtcattattcataggtttgactaacttattattacttta---taatattttagatattatt 34892549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 3086077 - 3086162
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatta 189  Q
    |||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||   ||||||||| ||||||||||    
T  3086077 tatttgtaattaattttattgatgtctgtcattattcatatgtttgactgacctattattacttta---taatattttagatattatta 3086162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 7121639 - 7121594
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  7121639 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 7121594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 34892138 - 34892183
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  34892138 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 34892183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 35206513 - 35206468
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || || ||||||||||||||||||||||    
T  35206513 gagatgaataatatctgcaatccatagttaatggacctaaaatgat 35206468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 36345785 - 36345740
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  36345785 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 36345740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 43520634 - 43520589
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  43520634 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 43520589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 3641796 - 3641844
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattca 138  Q
    |||||| |||||||| |||||||||||||||||||| | ||||||||||    
T  3641796 atatttgtaattatttgtaattaatttcattgatgtctatcattattca 3641844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 37656132 - 37656176
Alignment:
Q  36 agatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    |||||||||||||||| || | |||||||||||||||||||||||    
T  37656132 agatgaataatatctgcaatcggtagttaatggacctaaaatgat 37656176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 7121555 - 7121520
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgt 125  Q
    |||||| |||||||||||||||||||||||||||||    
T  7121555 atatttgtaattattagtaattaatttcattgatgt 7121520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 3085735 - 3085780
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | ||||||||||||| |||||||||    
T  3085735 gagatgaataatatctgcaatcggtagttaatggacttaaaatgat 3085780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 36595799 - 36595754
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || |  ||||||||||||||||||||||    
T  36595799 gagatgaataatatctgcaatcgttagttaatggacctaaaatgat 36595754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 38133999 - 38133954
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||| ||||||||||||    
T  38133999 gagatgaataatatctgcaatcggtagttaatgaacctaaaatgat 38133954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 39208271 - 39208226
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||| ||||||||||    
T  39208271 gagatgaataatatctgcaatcggtagttaatggatctaaaatgat 39208226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 41471312 - 41471357
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | ||||||||| |||||||||||||    
T  41471312 gagatgaataatatctgcaatcggtagttaatagacctaaaatgat 41471357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 45410326 - 45410371
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    |||||||||||||| || || | |||||||||||||||||||||||    
T  45410326 gagatgaataatatttgcaatcggtagttaatggacctaaaatgat 45410371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 9004 - 9159
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9004 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattactttatactaat 9103  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9104 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 9159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 8921 - 8966
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  8921 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 8966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 11566155 - 11566310
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11566155 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattactttatactaat 11566254  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11566255 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 11566310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 28235057 - 28234902
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||    
T  28235057 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctatcattattcataggtttgactaacctattattgctttatactaat 28234958  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28234957 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 28234902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 74 - 235
Target Start/End: Original strand, 37856135 - 37856295
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || |    
T  37856135 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtatgtcattattcataggtttgactaacctattattgctttatattatt 37856234  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaa 235  Q
    ||||  |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  37856235 atttcagatattattactttaattaacatgaaaaacgcaacagcaa-aaaataaaaacgcaa 37856295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 48807157 - 48807002
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||    
T  48807157 aaatgatagaataattatatttttaattattaataattaatttcattgatgtctatcattattcataggtttgactaacctattattattttatactaat 48807058  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48807057 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 48807002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 37295979 - 37295830
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  37295979 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgaataatctattattactttatattaat 37295880  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaa 223  Q
    ||||   ||||||||| |||||||||||||||||||||||||||||||||    
T  37295879 atttcatatattattaatttaattaacatgaaaaacgcaacaacaacaaa 37295830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 43176011 - 43176147
Alignment:
Q  83 aataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggat 182  Q
    ||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||||||  |||    
T  43176011 aataattatatttgtaattattagtaattaatttcattgatttctgtcattattcataagtttgactaacctattagtactttatactaatatttcagat 43176110  T
Q  183 attattactttaattaacatgaaaaacgcaacaacaa 219  Q
    |||||||||||||||||||||||||||||||||||||    
T  43176111 attattactttaattaacatgaaaaacgcaacaacaa 43176147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 230
Target Start/End: Complemental strand, 7088468 - 7088314
Alignment:
Q  75 aatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaata 174  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7088468 aatgatagaataattatatttgtaattattaataattaatttcattaatgtctgtcattattcatagatttgactaacctattattactttatactaata 7088369  T
Q  175 ttttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    |||  |||||||||||||||||||||||| |||| | |||||||| ||||||||||    
T  7088368 tttcagatattattactttaattaacatggaaaaggaaacaacaa-aaaataaaaa 7088314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 230
Target Start/End: Complemental strand, 16473054 - 16472900
Alignment:
Q  75 aatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaata 174  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||  ||||||||||    
T  16473054 aatgatagaataattatatttgtcattattagtaattaatttcattgatgtctatcattattcgtaggtttgactaacctattattacactatactaata 16472955  T
Q  175 ttttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    |||  ||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  16472954 tttcagatattattactttaattaacatgaaaaatgcaacaacaa-aaaataaaaa 16472900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 43176273 - 43176357
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  43176273 tatttgtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattacttta---taatattttagatattatt 43176357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 48806910 - 48806826
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  48806910 tatttgtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattacttta---taatattttagatattatt 48806826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 7088237 - 7088173
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattacttt 165  Q
    |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  7088237 tatttgtaattaatttcattaatgtctgtcattattcataggtttgactaacctattattacttt 7088173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 2449365 - 2449281
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| ||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||| ||||   ||||||||| |||||||||    
T  2449365 tatttgtaattaatttcattaatgtctgtaattattcatagatttgactaacctattattatttta---taatattttagatattatt 2449281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 37856398 - 37856464
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttata 168  Q
    |||| ||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  37856398 tatttgtaattaattttattgatgtctgtcattattcatagatttga-taacctattattactttata 37856464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 6092273 - 6092309
Alignment:
Q  180 gatattattactttaattaacatgaaaaacgcaacaa 216  Q
    |||||||||||||||||||||||||||||||||||||    
T  6092273 gatattattactttaattaacatgaaaaacgcaacaa 6092309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 6092410 - 6092490
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||     ||||||||| |||| ||||||||||||||||||||||||   ||||||||| |||||||||    
T  6092410 tatttgtaattaatttcattga----cgtcattatttatagatttgactaacctattattacttta---taatattttagatattatt 6092490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 48807238 - 48807192
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgata 81  Q
    ||||||||||||||||| || | ||||||||||||||||||||||||    
T  48807238 gagatgaataatatctgcaatcggtagttaatggacctaaaatgata 48807192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 16473133 - 16473088
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  16473133 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 16473088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 28235136 - 28235091
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  28235136 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 28235091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 37856053 - 37856098
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||    
T  37856053 gagatgaataatatctgcaatccgtagttaatagacctaaaatgat 37856098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 43493027 - 43493075
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattca 138  Q
    |||||| |||||||| |||||||||||||||||||| | ||||||||||    
T  43493027 atatttgtaattatttgtaattaatttcattgatgtctatcattattca 43493075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 2449465 - 2449420
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | ||||||||| |||||||||||||    
T  2449465 gagatgaataatatctgcaatcagtagttaattgacctaaaatgat 2449420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 11566072 - 11566117
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | ||||||||||| |||||||||||    
T  11566072 gagatgaataatatctgcaatctgtagttaatgggcctaaaatgat 11566117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 43175927 - 43175972
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||| ||||    
T  43175927 gagatgaataatatctgcaatcggtagttaatggacctaaagtgat 43175972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 53536801 - 53536753
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattca 138  Q
    |||||| || ||||| |||||||||||||||||||| | ||||||||||    
T  53536801 atatttgtatttatttgtaattaatttcattgatgtctatcattattca 53536753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 26494273 - 26494108
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctat---tattactttatact 170  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  26494273 aaatgatagaataattatatttgtaattattagtaattaattttattgatgtttgtcattattcataggtttgactaacctattagtattactttatact 26494174  T
Q  171 aatattttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26494173 aatattttagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaacgcaaca 26494108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 20484936 - 20485091
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  20484936 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgactaaccaattattactttatactaat 20485035  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20485036 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 20485091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 45075648 - 45075803
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45075648 aaatgatagaataattatatttgtaattattagtgattaatttcattgatgtctgtcattattcataggtttgactaacctattattactttatactaat 45075747  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45075748 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 45075803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 32592516 - 32592671
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  32592516 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgaccaacctattattactttataataat 32592615  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32592616 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 32592671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 4331137 - 4331292
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  4331137 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtatatcattattcataggtttgactaacctattattactttatactaat 4331236  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  4331237 atttcagatattattattttaattaacatgaaaaacgcaacaataa-aaaataaaaa 4331292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 32743483 - 32743638
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  32743483 aaatgatagaataattatatttgtaattattagtaattaatttcattaatgtctgtcatttttcataggtttgactaacctattattactttatactaat 32743582  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  ||||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  32743583 atttcagatattagtactttaattaacatgaaaaatgcaacaacaa-aaaataaaaa 32743638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 4274720 - 4274575
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  4274720 aaatgatagaataattatatttgtaattattagtaattgatttcattgatgtctgtcattattcataggtttgaataacctattattactttatactaat 4274621  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaa 219  Q
    ||||  ||||||||||||||| |||||||||||||| |||||||||    
T  4274620 atttcagatattattactttacttaacatgaaaaacacaacaacaa 4274575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 7941777 - 7941621
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  7941777 aaatgatataataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgactaacctatcattactttatactaat 7941678  T
Q  174 attttggatattattactttaattaacatga-aaaacgcaacaacaacaaaataaaaa 230  Q
    ||||   |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  7941677 atttcatatattattactttaattaacatgaaaaaacgcaacaacaa-aaaataaaaa 7941621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 11270051 - 11269907
Alignment:
Q  78 gatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattt 177  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11270051 gatagaataattatatttgtaattattagtaattaatttcattgatgtctttcattattcataggtttgactaacctattattactttatactaatattt 11269952  T
Q  178 tggatattattactttaattaacatgaaaaacgcaacaacaacaa 222  Q
      |||||||||| ||||||||||||||||||| || |||||||||    
T  11269951 cagatattattaatttaattaacatgaaaaacacagcaacaacaa 11269907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 39999350 - 39999196
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39999350 aaatgatagaataattatatttgtaattatttttaattaatttcgttgatgtctgtcattattcataggtttgactaacctattattactttatactaat 39999251  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  ||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  39999250 atttcagatattattac-ttatttaacatgaaaaacgcaacaacaa-aaaataaaaa 39999196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 19842804 - 19842958
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||    
T  19842804 aaatgataaaataattatatttgtaattattattaattaatttcattgatgtctgtcattattcataggtttgactgacctattattactttaaattaat 19842903  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    | |||  ||||||||| |||||||||||||||||| |||||||||| ||||||||||    
T  19842904 a-tttcaatattattattttaattaacatgaaaaatgcaacaacaa-aaaataaaaa 19842958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 10659118 - 10659202
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctatta 158  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  10659118 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctatcattattcataggtttgactaacctatta 10659202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 4274478 - 4274411
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttata 168  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4274478 tatttgtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattactttata 4274411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 19843057 - 19843135
Alignment:
Q  107 taattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  19843057 taattaatttcattgatgtttgtcattattaataggtttgactaacctattattacttta---taatattttagatattatt 19843135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 32592768 - 32592846
Alignment:
Q  107 taattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  32592768 taattaatttcattgatgtctgtcattattcataggtttgactaacctattattacttta---taatattttagatattatt 32592846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 20485181 - 20485265
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||   ||||||||| |||||||||    
T  20485181 tatttgtaattaatttcattgatgtctgtaattattcatagatttgactaacctattattacttta---taatattttagatattatt 20485265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 30294589 - 30294673
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||   ||||||||| |||||||||    
T  30294589 tatttgtaattaatttcattgatgtctgtcattattcataagtttgactaacccattattacttta---taatattttagatattatt 30294673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 45075898 - 45075982
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||   ||||||||| |||||||||    
T  45075898 tatttgtaattaatttcattgatgtctgtcattattcataggcttgactaacctattattatttta---taatattttagatattatt 45075982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 7941525 - 7941448
Alignment:
Q  107 taattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattat 187  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||   ||||||||| ||||||||    
T  7941525 taattaatttcattgatgtctgtcattatttataggtttgactaacttattattacttta---taatattttagatattat 7941448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 26494006 - 26493922
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||||||   ||||||||| |||||||||    
T  26494006 tatttgtaattaatttcattgatatttgtgattattcattggtttgactaatctattattacttta---taatattttagatattatt 26493922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 31889618 - 31889685
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttata 168  Q
    |||| |||||||||||||||||||| | |||||||||||  |||||||||||||||||||||||||||    
T  31889618 tatttgtaattaatttcattgatgtctatcattattcatcagtttgactaacctattattactttata 31889685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 31890164 - 31890101
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacc 153  Q
    ||||||||||||||| |||||||||||||||||||| | ||||| ||| |||||||||||||||    
T  31890164 atatttataattatttgtaattaatttcattgatgtctatcatttttcgtaggtttgactaacc 31890101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 32592433 - 32592478
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  32592433 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 32592478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 32743401 - 32743446
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  32743401 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 32743446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 14043820 - 14043772
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattca 138  Q
    ||||||||| ||||| |||||||||||||||||||| | ||||||||||    
T  14043820 atatttatatttatttgtaattaatttcattgatgtctatcattattca 14043772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 4274803 - 4274758
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||| ||||||||||||    
T  4274803 gagatgaataatatctgcaatcggtagttaatgaacctaaaatgat 4274758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 19842723 - 19842768
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||| ||||| || | |||||||||||||||||||||||    
T  19842723 gagatgaataaaatctgcaatcggtagttaatggacctaaaatgat 19842768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 20484852 - 20484897
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| ||   |||||||||||||||||||||||    
T  20484852 gagatgaataatatctgcaattggtagttaatggacctaaaatgat 20484897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 39999432 - 39999387
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||| ||||||||||| || | |||||||||||||||||||||||    
T  39999432 gagataaataatatctgcaatcggtagttaatggacctaaaatgat 39999387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 48099350 - 48099281
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattat 159  Q
    |||||| |||||||| |||||||| || ||| ||||||||||||||||  | ||||||| ||| ||||||    
T  48099350 atatttgtaattatttgtaattaaatttatttatgtttgtcattattcccaagtttgaccaacatattat 48099281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 48104025 - 48103956
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattat 159  Q
    |||||| |||||||| |||||||| || ||| ||||||||||||||||  | ||||||| ||| ||||||    
T  48104025 atatttgtaattatttgtaattaaatttatttatgtttgtcattattcccaagtttgaccaacatattat 48103956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 102
Target Start/End: Complemental strand, 7941548 - 7941520
Alignment:
Q  74 aaatgatagaataattatatttataatta 102  Q
    |||||||||||||||||||||||||||||    
T  7941548 aaatgatagaataattatatttataatta 7941520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 34722375 - 34722423
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattca 138  Q
    |||||| |||||||| |||||||||||||||||||| | | ||||||||    
T  34722375 atatttgtaattatttgtaattaatttcattgatgtctataattattca 34722423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 45075566 - 45075610
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatga 79  Q
    |||||||||||||| || || | ||||||||||||||||||||||    
T  45075566 gagatgaataatatgtgcaatcggtagttaatggacctaaaatga 45075610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 11886286 - 11886448
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11886286 aaatgatagaacaattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattactttatactaat 11886385  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    ||||   ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11886386 atttcatatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaacgcaaca 11886448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 13645113 - 13644951
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  13645113 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattactttatacttat 13645014  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||    
T  13645013 attttagatattattactttaattaacatgaaaaatacaacaacaa-aaaataaaaacgcaaca 13644951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 30846593 - 30846438
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30846593 aaatgatagaatagttatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattactttatactaat 30846494  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30846493 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 30846438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 48001146 - 48000997
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||||||||||    
T  48001146 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctttcattattcatagatttgactaacctattcttactttatactaat 48001047  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaa 223  Q
    ||||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  48001046 atttcagatattattactttaattaacatgaaaaatgcaacaacaacaaa 48000997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 14102116 - 14101958
Alignment:
Q  77 tgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatatt 176  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||    
T  14102116 tgatagaataattatatttgtaattattagtaattaatttcattgatgtctctcattatt-ataggtttgactaacatattattactttatactaatatt 14102018  T
Q  177 ttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    |  |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  14102017 tcagatattattactttaattaacatgaaaaacgcaacaac-agaaaataaaaacgaaaca 14101958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 14412133 - 14411975
Alignment:
Q  77 tgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatatt 176  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||    
T  14412133 tgatagaataattatatttgtaattattagtaattaatttcattgatgtctctcattatt-ataggtttgactaacatattattactttatactaatatt 14412035  T
Q  177 ttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    |  |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||    
T  14412034 tcagatattattactttaattaacatgaaaaacgcaacaac-agaaaataaaaacgaaaca 14411975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 107 - 230
Target Start/End: Original strand, 19073032 - 19073153
Alignment:
Q  107 taattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattattactttaattaacatgaaa 206  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||  ||||||||||||||||||||||||||    
T  19073032 taattaatttcattgatgtctgtcattattcataggtttgactgacctattattactttatactaata-tttcaatattattactttaattaacatgaaa 19073130  T
Q  207 aacgcaacaacaacaaaataaaaa 230  Q
    ||||||||||||| ||||||||||    
T  19073131 aacgcaacaacaa-aaaataaaaa 19073153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 30846348 - 30846281
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttata 168  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  30846348 tatttgtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattaatttata 30846281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 11886549 - 11886615
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttat 167  Q
    |||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  11886549 tatttgtaattaatttcattgatgtctgtcattattcatagatttgactaacctattattactttat 11886615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 19073251 - 19073328
Alignment:
Q  107 taattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattat 187  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||   ||||||||| ||||||||    
T  19073251 taattaatttcattgatgtgtgtcattattaataggtttgactaacctattattacttta---taatattttagatattat 19073328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 2526669 - 2526747
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttata 168  Q
    |||||| ||||||||  |||||||||||||| |||| | ||||||||||||||||| ||||||||||||||||||||||    
T  2526669 atatttgtaattatttataattaatttcattaatgtctatcattattcataggtttcactaacctattattactttata 2526747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 14101856 - 14101768
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcatag----gtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| |||||||||||||||    |||||||||||||||||||||||||   ||||||||| |||||||||    
T  14101856 tatttgtaattaatttcattgatgtctgtcattattcataggtatgtttgactaacctattattacttta---taatattttagatattatt 14101768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 14411873 - 14411785
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcatag----gtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| |||||||||||||||    |||||||||||||||||||||||||   ||||||||| |||||||||    
T  14411873 tatttgtaattaatttcattgatgtctgtcattattcataggtatgtttgactaacctattattacttta---taatattttagatattatt 14411785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 13645195 - 13645150
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  13645195 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 13645150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 19072658 - 19072703
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  19072658 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 19072703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 30846676 - 30846631
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  30846676 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 30846631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 48001228 - 48001183
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  48001228 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 48001183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 13644850 - 13644811
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcata 140  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  13644850 tatttgtaattaatttcattgatgtctgtcattattcata 13644811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 31512891 - 31512847
Alignment:
Q  36 agatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    |||||||||||||||| || | ||| |||||||||||||||||||    
T  31512891 agatgaataatatctgcaatcggtaattaatggacctaaaatgat 31512847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 11159197 - 11159042
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11159197 aaatgatagaataattatatttgaaattattagtaattaatttcattgatgtttgtcattattcatagatttgactaacctattattactttatactaat 11159098  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11159097 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 11159042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 17338550 - 17338396
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17338550 aaatgatagaataattatatttgtaattattagtaattaatatcattgatgtctgtcattattcataggtttgactaacctattattactttatactaat 17338451  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaa 229  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17338450 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaa 17338396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 26350528 - 26350683
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||    
T  26350528 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctatcattattcataggtttgaataacctgttattactttatactaat 26350627  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  ||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  26350628 atttcagatattattactttaattaacttgaaaaacgcaacaacaa-aaaataaaaa 26350683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 32396422 - 32396267
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  32396422 aaatgatagaataattatatttgtaattattagtaattaattttattgatgtctatcattattcataggtttgactaacctattattactttatactaat 32396323  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||  ||||||||| ||||||||||    
T  32396322 atttcagatattattactttaattaacatgaaaaatacaacaacaa-aaaataaaaa 32396267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 17338307 - 17338179
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattattactttaattaac 200  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  17338307 tatttgtaattaatttcagtgatgtctgtcattattcataggtttgactaacctattattactttatactaatatttcagatattattactttaattaac 17338208  T
Q  201 atgaaaaacgcaacaacaacaaaataaaaa 230  Q
    |||||||| |||||||||| ||||||||||    
T  17338207 atgaaaaatgcaacaacaa-aaaataaaaa 17338179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 35096960 - 35097040
Alignment:
Q  143 tttgactaacctattattactttatactaatattttggatattattactttaattaacatgaaaaacgcaacaacaacaaa 223  Q
    ||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  35096960 tttgactaacctattattattttatactaatatttcagatattattactttaattaacatgaaaaacgcaacaacaacaaa 35097040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 11158952 - 11158885
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttata 168  Q
    |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  11158952 tatttgtaattaatttcattgatgtatgtcattatttataggtttgactaacctattattactttata 11158885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 22209547 - 22209474
Alignment:
Q  89 tatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgact-aacctattatta 161  Q
    ||||||| ||||||||  |||||||||| ||| |||||| ||||||||||| ||||||||| ||||||||||||    
T  22209547 tatatttgtaattatttataattaattttatttatgtttatcattattcattggtttgactaaacctattatta 22209474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 22207574 - 22207501
Alignment:
Q  89 tatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgact-aacctattatta 161  Q
    ||||||| ||||||||  ||||| |||| ||| |||||| |||||| || ||||||||||| ||||||||||||    
T  22207574 tatatttgtaattatttataatttattttatttatgtttatcattactcgtaggtttgactaaacctattatta 22207501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 35096858 - 35096903
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    |||| |||||||||||| || | |||||||||||||||||||||||    
T  35096858 gagaggaataatatctgcaatcggtagttaatggacctaaaatgat 35096903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 5329784 - 5329622
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  5329784 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgactaacttattattactttatactaat 5329685  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    ||||  |||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  5329684 atttcagatattgttactttaattaacatgaaaaacgcaacaacaa-aaaataaaaatgcaaca 5329622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 21700178 - 21700327
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21700178 aaatgatataataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattactttatactaat 21700277  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaa 223  Q
    ||||  |||||||||| |||||||||||||||||||||||||||||||||    
T  21700278 atttcagatattattaatttaattaacatgaaaaacgcaacaacaacaaa 21700327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 42290572 - 42290716
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||    
T  42290572 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtt-gttattattcataagtttgactaacctattattactttatactaat 42290670  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaa 219  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  42290671 attttagatattattactttaattaacatgaaaaacgcaacaacaa 42290716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 12627905 - 12627743
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||| ||||||||||||||| | |||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12627905 aaataatagaataattatatctgtaattattagtaattaattaaattaatgtttgtcattattcataggtttgactaacctattattactttatactaat 12627806  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    | ||   |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12627805 aattcatatattattactttaattaacatgaaaaacgcaacaacaac-aaataaaaacgcaaca 12627743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 51461359 - 51461514
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  51461359 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctgtcgttattcataggtttgactaacctcttattactttatactaat 51461458  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||  |||||| || ||||||||||    
T  51461459 atttcagatattattactttaattaacatgaaaaaaacaacaataa-aaaataaaaa 51461514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 7943244 - 7943379
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||| ||||||| ||||||||||||    
T  7943244 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtatgtcattatttatatgtttggctaacatattattcctttatactaat 7943343  T
Q  174 attttggatattattactttaattaacatgaaaaac 209  Q
    ||||  ||||||||||||||||||||||||||||||    
T  7943344 atttcagatattattactttaattaacatgaaaaac 7943379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 41909552 - 41909458
Alignment:
Q  142 gtttgactaacctattattactttatactaatattttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  41909552 gtttgactaacctattattactttatactaatatttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaacggaaca 41909458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 5329520 - 5329436
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||   ||||||||| |||||||||    
T  5329520 tatttgtaattaatttcattgatgtttgtcattattgataggtttgaataacctattattacttta---taatattttagatattatt 5329436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 51461604 - 51461689
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcatagg-tttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||   ||||||||| |||||||||    
T  51461604 tatttgtaattaatttcattgatgtctgtcattattcataggttttcactaacctattattacttta---taatattttagatattatt 51461689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 12627641 - 12627574
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttata 168  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| |||||||    
T  12627641 tatttgtaattaatttcattgatgtctgtcattattcatagatttgattaacctattattgctttata 12627574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 41909357 - 41909273
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| ||||| ||| |||||||||| |||||||||| |||| ||||||||||||||||||||||||   ||||||||| |||||||||    
T  41909357 tatttgtaatgaatgtcattgatgtatgtcattattaatagatttgactaacctattattacttta---taatattttagatattatt 41909273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 44387674 - 44387734
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattatta 161  Q
    |||| |||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||    
T  44387674 tatttgtaattaattccatttatgtttgtcattattcacaagtttgactaacctattatta 44387734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 12627988 - 12627946
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaat 77  Q
    |||||||||||||||||||| | ||||||||||||||||||||    
T  12627988 gagatgaataatatctgtaatcggtagttaatggacctaaaat 12627946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 13760942 - 13760897
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  13760942 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 13760897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 41909676 - 41909631
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  41909676 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 41909631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 42290490 - 42290535
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    |||||||||||||||||||| | ||||||||| |||||||||||||    
T  42290490 gagatgaataatatctgtaatcggtagttaatagacctaaaatgat 42290535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 7943162 - 7943207
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | ||||||||||||| |||||||||    
T  7943162 gagatgaataatatctgcaatcggtagttaatggacttaaaatgat 7943207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 9936740 - 9936671
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattat 159  Q
    |||||| |||||||| |||||||| || ||| ||||||||||||||||  | ||||||| ||| ||||||    
T  9936740 atatttgtaattatttgtaattaaatttatttatgtttgtcattattcccaagtttgaccaacatattat 9936671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 35282165 - 35282016
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35282165 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtttgtcattattcataggtttcactaacctattattactttatactaat 35282066  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaa 223  Q
    ||||   ||||||||| |||||||||||||||||||||||||||||||||    
T  35282065 atttcaaatattattaatttaattaacatgaaaaacgcaacaacaacaaa 35282016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 41622451 - 41622606
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||    
T  41622451 aaatgatataataattatatttgtaattattagtaattaatttcattgatgtctgtcattatttataggtttcactaacctattattactttatactaat 41622550  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41622551 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 41622606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 20743757 - 20743604
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||    
T  20743757 aaatgatagaataattatatttgtaattattattaattaatttcattgatgtct-tcattattcataggtttgactgacctattattactttatactaat 20743659  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    | |||  ||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  20743658 a-tttcaatattattactttaatttacatgaaaaacgcaacaacaa-aaaataaaaa 20743604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 35671385 - 35671510
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35671385 aaatgataaaataattatattgataactattagtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattactttatactaat 35671484  T
Q  174 attttggatattattactttaattaa 199  Q
    ||||   |||||||||||||||||||    
T  35671485 atttcacatattattactttaattaa 35671510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 2170336 - 2170207
Alignment:
Q  78 gatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattt 177  Q
    |||||||||||||||||| |||||||||||||||||||| |||            |||||||||||||||||||||||||||||||||||||||||||||    
T  2170336 gatagaataattatatttgtaattattagtaattaattttatt------------tattcataggtttgactaacctattattactttatactaatattt 2170249  T
Q  178 tggatattattactttaattaacatgaaaaacgcaacaacaa 219  Q
      ||||||||||||||||||||||||||||||||||||||||    
T  2170248 cagatattattactttaattaacatgaaaaacgcaacaacaa 2170207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 35671514 - 35671608
Alignment:
Q  142 gtttgactaacctattattactttatactaatattttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaacgcaaca 237  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||||| || |||||||||||||||||    
T  35671514 gtttgactaacctattattactttatactaatatttcacatattattactttaattaacatgaaaaactcaacaataa-aaaataaaaacgcaaca 35671608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 41622696 - 41622780
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  41622696 tatttgtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattacttta---taatattttagatattatt 41622780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 2170102 - 2170025
Alignment:
Q  108 aattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||| |||||||||    
T  2170102 aattaatttcattgatgtttgtcattattcataggtttgactaacttattattacttta---taatattttagatattatt 2170025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 20743515 - 20743448
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttata 168  Q
    |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  20743515 tatttgtaattaatttcattgatgtctgtcattattaataggtttgactaacctattattactttata 20743448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 35671721 - 35671794
Alignment:
Q  112 aatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  35671721 aatttcattgatgtctgtcattattcataggtttgactaacctattattacttta---taatattttagatattatt 35671794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 30192813 - 30192874
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattac 162  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30192813 tatttgtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattac 30192874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 2170423 - 2170378
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    |||||||||||||||||||| | |||||||||| ||||||||||||    
T  2170423 gagatgaataatatctgtaatcggtagttaatgaacctaaaatgat 2170378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 41622367 - 41622412
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  41622367 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 41622412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 30966555 - 30966521
Alignment:
Q  91 tatttataattattagtaattaatttcattgatgt 125  Q
    |||||||||||||| ||||||||||||||||||||    
T  30966555 tatttataattatttgtaattaatttcattgatgt 30966521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 30966240 - 30966288
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattca 138  Q
    |||||| ||||||||  ||||||||||||||||||| | ||||||||||    
T  30966240 atatttgtaattatttataattaatttcattgatgtctatcattattca 30966288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 42912729 - 42912685
Alignment:
Q  36 agatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    |||||||||||||||| || | ||| |||||||||||||||||||    
T  42912729 agatgaataatatctgcaatcagtaattaatggacctaaaatgat 42912685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 23261007 - 23260862
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||    
T  23261007 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctttcattattcataggtttgactagcctattattactttatactaat 23260908  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaa 219  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  23260907 attttagatattattactttaattaacatgaaaaacgcaacaacaa 23260862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 23266013 - 23265868
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||    
T  23266013 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctttcattattcataggtttgactagcctattattactttatactaat 23265914  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaa 219  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  23265913 attttagatattattactttaattaacatgaaaaacgcaacaacaa 23265868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 6232908 - 6233063
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  6232908 aaatgatagaataattatatttgtaattattagtaattaatttaattgatgtatgtcattattcataggtttgactaacctattattactttatgctaat 6233007  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6233008 atttaagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 6233063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 37321911 - 37321756
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  37321911 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcataggtttaactaatctattattactttatactaat 37321812  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37321811 atttcagatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 37321756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 29407639 - 29407494
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  29407639 aaatgaaagaataattatatttgtaattattagtaattaatttcattgatgtctgtcattattcatagatttgactaacctattattactttctactaat 29407540  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaa 219  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||    
T  29407539 atttcagatattattactttaattaacatgaaaaacgcaacaacaa 29407494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 40156807 - 40156952
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||    
T  40156807 aaatgatagaataattatatttgtaattattagtaattaatttcattgatgtctatcattattgataggtttgactaacctattattactttatactaat 40156906  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaa 219  Q
    ||||  ||||||||||||||||||||||||||||| ||||||||||    
T  40156907 atttcagatattattactttaattaacatgaaaaatgcaacaacaa 40156952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 2271510 - 2271356
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||    
T  2271510 aaatgatagaataattatatttgtaattattattaattaatttcattgaagtctgtcattattcataggtttgactgacctattattactttatactaat 2271411  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    | |||  ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2271410 a-tttcaatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 2271356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 14002795 - 14002950
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||    
T  14002795 aaatgatagaataattatatttgtaatcattagtaattaatttcattgatgtctgtcattattcatagatttgaataatctattattactttatactaat 14002894  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    ||||  ||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  14002895 atttcagatattattactttaattaacatgaaaaatgcaacaacaa-aaaataaaaa 14002950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 28138945 - 28139072
Alignment:
Q  108 aattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattattactttaattaacatgaaaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28138945 aattaatttcattgatgtttgtcattattcataggtttgactaacc-attattactttatactaatattttagatattattactttaattaacatgaaaa 28139043  T
Q  208 acgcaacaacaacaaaataaaaacgcaaca 237  Q
    |||||||||||| |||||||||| ||||||    
T  28139044 acgcaacaacaa-aaaataaaaatgcaaca 28139072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 28139174 - 28139258
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  28139174 tatttgtaattaatttcattgatgtctgtcattattcataggtttgactaacctattattacttta---taatattttagatattatt 28139258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 37294750 - 37294666
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||   ||||||||| |||||||||    
T  37294750 tatttgtaattaatttcattgatgtatgtcattattcataggtttgattaacctattattacttta---taatattttagatattatt 37294666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 29407389 - 29407311
Alignment:
Q  107 taattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  29407389 taattaatttaattgatgtctgtcattattcataggtttgactaacctattattacttta---taatattttagatattatt 29407311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 1729196 - 1729112
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||   ||||||||| |||||||||    
T  1729196 tatttgtaattaatttcattgatgtctgtcattattcataggtttgattaatctattattacttta---taatattttagatattatt 1729112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 2271265 - 2271181
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||   ||||||||| |||||||||    
T  2271265 tatttgtaattaatttcattgatgtctgtcattattaataagtttgactaacctattattacttta---taatattttagatattatt 2271181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 23260765 - 23260681
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  23260765 tatttgtaattaatttcatcgatgtctgtcgttattcataggtttgactaacctattattacttta---taatattttagatattatt 23260681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 28138882 - 28138931
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgat 123  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28138882 aaatgatagaataattatatttgtaattattagtaattaatttcattgat 28138931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 14003023 - 14003067
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttca 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  14003023 aaatgataaaataattatatttataattattagtaattaatttca 14003067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 29193837 - 29193775
Alignment:
Q  89 tatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaa 151  Q
    ||||||| ||||||||  ||||||| || ||| ||||||||||||||| ||||||||||||||    
T  29193837 tatatttgtaattatttataattaagtttatttatgtttgtcattatttataggtttgactaa 29193775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 2271591 - 2271546
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  2271591 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 2271546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 6232828 - 6232873
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  6232828 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 6232873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 29407722 - 29407677
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  29407722 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 29407677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 44553152 - 44553225
Alignment:
Q  89 tatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgact-aacctattatta 161  Q
    ||||||| ||||||||  || ||||||| ||| |||| | ||||||||||||||||||||| ||||||||||||    
T  44553152 tatatttgtaattatttatatttaattttatttatgtatatcattattcataggtttgactaaacctattatta 44553225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 37893322 - 37893266
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattcataggtttg 146  Q
    |||||| |||||||| |||||||||||||||||| | | |||||||||||| |||||    
T  37893322 atatttgtaattatttgtaattaatttcattgatatctatcattattcatatgtttg 37893266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 37321988 - 37321945
Alignment:
Q  37 gatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||| || | |||||||||||||||||||||||    
T  37321988 gatgaataatatctgcaatcggtagttaatggacctaaaatgat 37321945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 23265771 - 23265725
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttga 147  Q
    |||| |||||||||||||| ||||| |||| ||||||||||||||||    
T  23265771 tatttgtaattaatttcatcgatgtctgtcgttattcataggtttga 23265725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 23266097 - 23266052
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||| ||||||||||    
T  23266097 gagatgaataatatctgcaatcggtagttaatggatctaaaatgat 23266052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 28138801 - 28138846
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| ||   |||||||||||||||||||||||    
T  28138801 gagatgaataatatctgcaattggtagttaatggacctaaaatgat 28138846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 28419629 - 28419673
Alignment:
Q  36 agatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    |||||||||||||||| || | ||| |||||||||||||||||||    
T  28419629 agatgaataatatctgcaatcggtaattaatggacctaaaatgat 28419673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 127794 - 127948
Alignment:
Q  74 aaatgatagaataattatatttataattattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaat 173  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  127794 aaatgatagaataattatatttgtaattattattaattaatttcattgatgtctgtcattattcataggtttgactgaccaattattactttatactaat 127893  T
Q  174 attttggatattattactttaattaacatgaaaaacgcaacaacaacaaaataaaaa 230  Q
    | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  127894 a-tttcgatattattactttaattaacatgaaaaacgcaacaacaa-aaaataaaaa 127948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 188
Target Start/End: Original strand, 128067 - 128151
Alignment:
Q  101 tattagtaattaatttcattgatgtttgtcattattcataggtttgactaacctattattactttatactaatattttggatattatt 188  Q
    |||| |||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  128067 tatttgtaattaatttcattgatgtctttcattattaataggtttgactaacctattattacttta---taatattttagatattatt 128151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 127712 - 127757
Alignment:
Q  35 gagatgaataatatctgtaacccgtagttaatggacctaaaatgat 80  Q
    ||||||||||||||||| || | |||||||||||||||||||||||    
T  127712 gagatgaataatatctgcaatcggtagttaatggacctaaaatgat 127757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 356 - 308
Alignment:
Q  90 atatttataattattagtaattaatttcattgatgtttgtcattattca 138  Q
    |||||| |||||||| |||||||||||||||||||| | ||||||||||    
T  356 atatttgtaattatttgtaattaatttcattgatgtctatcattattca 308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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