View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_53 (Length: 270)
Name: NF0839_low_53
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 13326336 - 13326137
Alignment:
| Q |
41 |
acatcatcagaatgcatgccatcatgcgctactagtggatccacttcaaacaccgtaccctttgggagagtacttggaacaatgtcatctgtaacatttt |
140 |
Q |
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| T |
13326336 |
acatcatcagaatgcatgccatcatgcgctactagtggatccacttcaaacaccgtacccgttgggagagtacttggaacaatgtcatctgtaacatttt |
13326237 |
T |
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| Q |
141 |
gtaattcaaaagaaaaagatgtagtttgagtgtcatgttgcttcggacccttagggtcttgagctggagctgaagtggttggaatcatgtttgcaacagc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
13326236 |
gtaattcaaaagaaaaagatgtagtttgagtgtcatgttgcttcggacccttagggtcttgagctggagctgaagtggttggaaccatgtttgtaacagc |
13326137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 41 - 233
Target Start/End: Original strand, 8657159 - 8657351
Alignment:
| Q |
41 |
acatcatcagaatgcatgccatcatgcgctactagtggatccacttcaaacaccgtaccctttgggagagtacttggaacaatgtcatctgtaacatttt |
140 |
Q |
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||||||||| |||||| |||||| ||||||||||||||||||| |||| ||| ||||| | | |||||||||| ||||||||||| ||||||||||||| |
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| T |
8657159 |
acatcatcaaaatgcacgccatcgtgcgctactagtggatccatttcagacatcgtactcgtcgggagagtacctggaacaatgttgtctgtaacatttt |
8657258 |
T |
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| Q |
141 |
gtaattcaaaagaaaaagatgtagtttgagtgtcatgttgcttcggacccttagggtcttgagctggagctgaagtggttggaatcatgtttg |
233 |
Q |
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| T |
8657259 |
gtaattcaaaagaaaaagatgtggtttgagtgtcatgttgcttcggacccttagggtcttgtgccagagctgaagtggttgggaccatgtttg |
8657351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 30417730 - 30417539
Alignment:
| Q |
41 |
acatcatcagaatgcatgccatcatgcgctactagtggatccacttcaaacaccgtaccctttgggagagtacttggaacaatgtcatctgtaacatttt |
140 |
Q |
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||||||||| |||||| ||||| |||||||||||||||||||| |||||||||||||| | | |||||||||| | |||||| ||| ||||||||||||| |
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| T |
30417730 |
acatcatcaaaatgcacgccattatgcgctactagtggatccatttcaaacaccgtactcgtcgggagagtacctagaacaacgtcgtctgtaacatttt |
30417631 |
T |
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| Q |
141 |
gtaattcaaaagaaaaagatgtagtttgagtgtcatgttgcttcggacccttagggtcttgagctggagctgaagtggttggaatcatgtttg |
233 |
Q |
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| T |
30417630 |
gtaattcaaaagaaaaa-atgtggtttgagtgtcatgttgcttcggacccttagggtcttgtgccggagctgaagtggttggaaccatgtttg |
30417539 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 41 - 238
Target Start/End: Original strand, 15469319 - 15469516
Alignment:
| Q |
41 |
acatcatcagaatgcatgccatcatgcgctactagtggatccacttcaaacaccgtaccctttgggagagtacttggaacaatgtcatctgtaacatttt |
140 |
Q |
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||||||||| |||||| |||||| ||||||||||||| ||||| || ||||||||||| | | |||| || || |||||||||||| ||||||||||||| |
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| T |
15469319 |
acatcatcaaaatgcacgccatcgtgcgctactagtgaatccatttgaaacaccgtactcgtcgggatagaacctggaacaatgtcgtctgtaacatttt |
15469418 |
T |
|
| Q |
141 |
gtaattcaaaagaaaaagatgtagtttgagtgtcatgttgcttcggacccttagggtcttgagctggagctgaagtggttggaatcatgtttgcaaca |
238 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| || |||||||||||||||| || |||||||| |||| |
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| T |
15469419 |
gtaattcaaaagaaaaagatgtggtttgagtggcatgttgcttcggacccttagggtcttgtgccggagctgaagtggttgcaaccatgtttgtaaca |
15469516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 44 - 240
Target Start/End: Complemental strand, 2898901 - 2898705
Alignment:
| Q |
44 |
tcatcagaatgcatgccatcatgcgctactagtggatccacttcaaacaccgtaccctttgggagagtacttggaacaatgtcatctgtaacattttgta |
143 |
Q |
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|||||| ||| || |||||| ||||||||||| ||||||| |||||||||||||| | | |||||||||| |||||||||||| |||||||||||||||| |
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| T |
2898901 |
tcatcaaaatacacgccatcgtgcgctactaggggatccatttcaaacaccgtactcgtcgggagagtacctggaacaatgtcgtctgtaacattttgta |
2898802 |
T |
|
| Q |
144 |
attcaaaagaaaaagatgtagtttgagtgtcatgttgcttcggacccttagggtcttgagctggagctgaagtggttggaatcatgtttgcaacagc |
240 |
Q |
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|| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||| | |||||| |||||| |
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| T |
2898801 |
atgcaaaagaaaaagatgtggtttgagtgtcacgttgcttcggaaccttagggtcttgtgccggagctgaagtggttggaaccgtgtttgtaacagc |
2898705 |
T |
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