View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_58 (Length: 262)
Name: NF0839_low_58
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 16954114 - 16954347
Alignment:
| Q |
1 |
tgcagctgctgcaagggcgcgtctcgcttttctttgtcgaatcccacaggcattgcaaagtgactgttacaaaaacatatttgtattgttaatgcgaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16954114 |
tgcagctgctgcaagggcgcgtctcgcttttctttgtcgaatcccacaggcattgcaaagtgactgttacaaaaacatatttgtattgttaatgcgaagt |
16954213 |
T |
|
| Q |
101 |
tatatcgaggatgagttcctaagccataaaagagcttaatcatgaacaaatcttatacaagcaaggtttatctaatctatatatcgatgtcgcgatataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16954214 |
tatatcgaggatgagttcctaagccataaaagagcttaatcatgaacaaatcttatacaagcaaggtttatctaatctatatatcgatgtcgcgatataa |
16954313 |
T |
|
| Q |
201 |
gaagtttcctatatcagtagtatttgatgtaatt |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
16954314 |
gaagtttcctatatcagtagtatttgatgtaatt |
16954347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 17023705 - 17023938
Alignment:
| Q |
1 |
tgcagctgctgcaagggcgcgtctcgcttttctttgtcgaatcccacaggcattgcaaagtgactgttacaaaaacatatttgtattgttaatgcgaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17023705 |
tgcagctgctgcaagggcgcgtctcgcttttctttgtcgaatcccacaggcattgcaaagtgactgttacaaaaacatatttgtattgttaatgcgaagt |
17023804 |
T |
|
| Q |
101 |
tatatcgaggatgagttcctaagccataaaagagcttaatcatgaacaaatcttatacaagcaaggtttatctaatctatatatcgatgtcgcgatataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17023805 |
tatatcgaggatgagttcctaagccataaaagagcttaatcatgaacaaatcttatacaagcaaggtttatctaatctatatatcgatgtcgcgatataa |
17023904 |
T |
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| Q |
201 |
gaagtttcctatatcagtagtatttgatgtaatt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
17023905 |
gaagtttcctatatcagtagtatttgatgtaatt |
17023938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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