View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_6 (Length: 601)
Name: NF0839_low_6
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 9 - 580
Target Start/End: Complemental strand, 8073754 - 8073190
Alignment:
| Q |
9 |
gagcagaacctgtggtgattgagattctaagaaatcttctttagttctaacagtaatttcattccatgttttgcaaacagaaccaaatgcacggaaacct |
108 |
Q |
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| T |
8073754 |
gagcaaaacctgtggtgattgagattctaagaaatcttctttagttctaacagtaatttcattccatgttttgcaaacagaaccaaatgcacggaaacct |
8073655 |
T |
|
| Q |
109 |
accacatctagtcccttagaaatctcctcccataactcatttccaatttctggtaatatttgagggcctgcataaatataagagctaatgattacatgca |
208 |
Q |
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| T |
8073654 |
accacatctagtcccttagaaatctcctcccataactcatttccaatttctgctaatatttgagggcctgcataaatataagagctaatgattacatgca |
8073555 |
T |
|
| Q |
209 |
tcaagatattccattaagatggtataaagggaagatggaagtgcaagaaaagaggagatatgaactcctatggagtaggcaagtaggtgaatgagacatt |
308 |
Q |
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| T |
8073554 |
tcaagatattccattaagatggtataaagggaagatggaagtgcaagaaaagaggagatatgaactcctatggagtgggcaagtaggtgaatgagacatt |
8073455 |
T |
|
| Q |
309 |
caaacgtgtcgtggtaatttagacctcgaccgcaagataagtaaaatttgactaaaaataattctagcaaaactttgaatccaaatctctcaaaggattt |
408 |
Q |
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| T |
8073454 |
caaaagtgtcatggtaatttagacctcgaccgtaagataagtaaaatttgactaaaaataattctagcaaaattttgaatccaaatctctcaaaggattt |
8073355 |
T |
|
| Q |
409 |
gtcattagctaagactcattaactgagtttgattatttagtcagtagtaatatatattagctagtacacctacaatgattaaaaactgcgatattagaat |
508 |
Q |
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| T |
8073354 |
gtcattagctaaaactcattaactaagtttgattatttagtcagtagtaatatatattagctagtacac-------gattaaaaactgcaatattagaat |
8073262 |
T |
|
| Q |
509 |
aatttatcactagcaacaaaagctagacaaatnnnnnnnnttgtaatggaaatttaggatgagatgatgatg |
580 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
8073261 |
aatttatcactagcaacaaaagctagacaaataaaaaaaattgtaatgaaaatttaggatgagatgatgatg |
8073190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 9900937 - 9901015
Alignment:
| Q |
9 |
gagcagaacctgtggtgattgagattctaagaaatcttctttagttctaacagtaatttcattccatgttttgcaaaca |
87 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
9900937 |
gagcaaaacctatggtgattgagattctaagaaatcttctttagttctaagagtaagttcattccatgctttgcaaaca |
9901015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 9901125 - 9901069
Alignment:
| Q |
9 |
gagcagaacctgtggtgattgagattctaagaaatcttctttagttctaacagtaat |
65 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9901125 |
gagcaaaacctatggtgattgagattctaagaaatcttctttagttctaacagtaat |
9901069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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