View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0839_low_60 (Length: 259)
Name: NF0839_low_60
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0839_low_60 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 128 - 259
Target Start/End: Original strand, 12819336 - 12819467
Alignment:
| Q |
128 |
aaactcaacaggtcatgcaaagatatcagaaaagcaatataaggaacaatgtcaaaggaccacgacattcttcgtatgaatcagttatcattatccattg |
227 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
12819336 |
aaactcaacaggtcctgcaaagatctcagaaaagcaatataaggaacaatgtcaaaggaccacggcattcttcgtatgaatcagttatcattatcaattg |
12819435 |
T |
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| Q |
228 |
aggtatgtatcatagagtactatgcagtatta |
259 |
Q |
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| T |
12819436 |
aggtatgtatcatagcgtactatgcagtatta |
12819467 |
T |
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Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 12819181 - 12819285
Alignment:
| Q |
15 |
aaatcgagagtgggaaaacattcaaagagagattttcttttagtatatagatatagaccatattttctgcactattttcttgaaaacaaaagttggtgaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12819181 |
aaatcgagagtgggaaaacattcaaagagagattttcttatagtatatagatatagaccatattttctgcactattttcttgaaaacaaaagttggtgaa |
12819280 |
T |
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| Q |
115 |
agcaa |
119 |
Q |
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||||| |
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| T |
12819281 |
agcaa |
12819285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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