View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0839_low_67 (Length: 247)

Name: NF0839_low_67
Description: NF0839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0839_low_67
NF0839_low_67
[»] chr3 (24 HSPs)
chr3 (31-168)||(6942017-6942154)
chr3 (34-168)||(6781774-6781908)
chr3 (31-168)||(6945349-6945486)
chr3 (34-168)||(6733755-6733889)
chr3 (31-168)||(7585952-7586089)
chr3 (31-168)||(6523297-6523434)
chr3 (31-168)||(6556529-6556666)
chr3 (57-168)||(6841408-6841519)
chr3 (57-163)||(8588009-8588115)
chr3 (72-165)||(8570804-8570897)
chr3 (34-109)||(8452775-8452850)
chr3 (31-109)||(6528828-6528906)
chr3 (63-161)||(6257287-6257385)
chr3 (63-161)||(6898173-6898271)
chr3 (36-94)||(8469715-8469773)
chr3 (72-157)||(6243406-6243491)
chr3 (33-145)||(6481799-6481911)
chr3 (125-168)||(6530427-6530470)
chr3 (63-161)||(6723925-6724023)
chr3 (64-165)||(6450639-6450740)
chr3 (63-146)||(6593199-6593282)
chr3 (78-144)||(5262040-5262106)
chr3 (64-165)||(6730567-6730668)
chr3 (72-161)||(6851133-6851222)
[»] scaffold1643 (1 HSPs)
scaffold1643 (30-168)||(251-389)
[»] scaffold2053 (1 HSPs)
scaffold2053 (31-168)||(70-207)
[»] scaffold0425 (1 HSPs)
scaffold0425 (30-168)||(9576-9714)
[»] chr7 (1 HSPs)
chr7 (64-115)||(6575170-6575221)
[»] scaffold0958 (1 HSPs)
scaffold0958 (75-160)||(1653-1738)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 6942154 - 6942017
Alignment:
Q  31 tacgttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgca 130  Q
    |||||||||||||||| |||  |   ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  6942154 tacgttgctataattccctttctacactttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttcaccaaacttcattatctgta 6942055  T
Q  131 tttgtacgattgtccagagctggaatcgtttccaatgg 168  Q
    | ||||||||||||||||||||||||||||||||||||    
T  6942054 tctgtacgattgtccagagctggaatcgtttccaatgg 6942017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 6781774 - 6781908
Alignment:
Q  34 gttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcattt 133  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||| || |    
T  6781774 gttgttataattctcttggtgatctttcaataaaaggatggcactcctcctccttgcctttggaactacacttgttcaccaaacttcattatctgtatct 6781873  T
Q  134 gtacgattgtccagagctggaatcgtttccaatgg 168  Q
    |||||||||||||||||||||||||||||||||||    
T  6781874 gtacgattgtccagagctggaatcgtttccaatgg 6781908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 6945486 - 6945349
Alignment:
Q  31 tacgttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgca 130  Q
    ||||||||||||||| |||||     |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  6945486 tacgttgctataattatcttgaaagactttcaataaaaggatggcattcctcctccttgcctttttcactacacttgttcaccaaacttcattatctgta 6945387  T
Q  131 tttgtacgattgtccagagctggaatcgtttccaatgg 168  Q
    | ||||||||||||||||||||||||| ||||||||||    
T  6945386 tctgtacgattgtccagagctggaatcctttccaatgg 6945349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 168
Target Start/End: Complemental strand, 6733889 - 6733755
Alignment:
Q  34 gttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcattt 133  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||  |||    
T  6733889 gttgttataattctcttggtgatctttcaataaaaggatggcactcctcctccttgcctttggaactacacttgttcaccaaacttcattatctgtgttt 6733790  T
Q  134 gtacgattgtccagagctggaatcgtttccaatgg 168  Q
    ||  |||||||||||||||||||||||||||||||    
T  6733789 gtttgattgtccagagctggaatcgtttccaatgg 6733755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 7586089 - 7585952
Alignment:
Q  31 tacgttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgca 130  Q
    |||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||  |||  |  |||||     
T  7586089 tacgttgctataattctcttcgtgatctttcaataaaaggatggcactcctcctccttgcctttggaactacacttgttcaccagtcttagtgctctgcg 7585990  T
Q  131 tttgtacgattgtccagagctggaatcgtttccaatgg 168  Q
    | ||||||||||||||||||||||||||||||||||||    
T  7585989 tctgtacgattgtccagagctggaatcgtttccaatgg 7585952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 6523297 - 6523434
Alignment:
Q  31 tacgttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgca 130  Q
    ||||||||||||||| |||| || | |||||||||||||| |||  ||||||||||||||||||   |||||||||||| ||||  |||| || |||||     
T  6523297 tacgttgctataattttcttcgtgatctttcaataaaaggctggtgctcctcctccttgcctttggaactacacttgttcaccagtcttcgttctctgcg 6523396  T
Q  131 tttgtacgattgtccagagctggaatcgtttccaatgg 168  Q
    | ||||||||||||||||||||||||||||||||||||    
T  6523397 tctgtacgattgtccagagctggaatcgtttccaatgg 6523434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 6556529 - 6556666
Alignment:
Q  31 tacgttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgca 130  Q
    ||||||||||||||| |||| || | |||||||||||||| |||  ||||||||||||||||||   |||||||||||| ||||||||||| | |||| |    
T  6556529 tacgttgctataattttcttcgtgatctttcaataaaaggctggtgctcctcctccttgcctttggaactacacttgttcaccaaacttcaatctctgta 6556628  T
Q  131 tttgtacgattgtccagagctggaatcgtttccaatgg 168  Q
    | |||||||||||||||||||||||||  |||||||||    
T  6556629 tctgtacgattgtccagagctggaatcccttccaatgg 6556666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 168
Target Start/End: Original strand, 6841408 - 6841519
Alignment:
Q  57 ctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtccagagctggaat 156  Q
    ||||||||| ||||||||  ||||||||||||||||||   |||||||||||| ||||  |||| || |||| || || |||||||||||||||||||||    
T  6841408 ctttcaatagaaggatggggctcctcctccttgcctttggaactacacttgttcaccagtcttcgttctctgtatctggacgattgtccagagctggaat 6841507  T
Q  157 cgtttccaatgg 168  Q
    ||||||||||||    
T  6841508 cgtttccaatgg 6841519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 8588115 - 8588009
Alignment:
Q  57 ctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtccagagctggaat 156  Q
    ||||||||||||||||||| ||||| ||||||||||||   |||||||||||| ||||| ||| ||||||| | ||||| || |||||||||| ||||||    
T  8588115 ctttcaataaaaggatggcgctcctactccttgcctttggaactacacttgttcaccaatcttgattatcttcgtttgtgcggttgtccagagttggaat 8588016  T
Q  157 cgtttcc 163  Q
    |||||||    
T  8588015 cgtttcc 8588009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 8570804 - 8570897
Alignment:
Q  72 tggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtccagagctggaatcgtttccaa 165  Q
    |||||||||||||||||||||||| | | ||||||||| ||||| |||||||||||  | |||| |||||||||| |||||||||| |||||||    
T  8570804 tggcactcctcctccttgccttttaccccacacttgttcaccaatcttcattatctagagttgtccgattgtccacagctggaatcatttccaa 8570897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 8452850 - 8452775
Alignment:
Q  34 gttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgtt 109  Q
    |||||||||||||||||||| | |||||||||| | |||||  ||||||||||||| |||||||||||||||||||    
T  8452850 gttgctataattctcttggtgaactttcaataacaagatggtgctcctcctccttgtctttttcactacacttgtt 8452775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 6528828 - 6528906
Alignment:
Q  31 tacgttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgtt 109  Q
    |||||||||||||||||||| |    || |||||||||||||||||||||||||||||||||||   ||||||||||||    
T  6528828 tacgttgctataattctctttggagactatcaataaaaggatggcactcctcctccttgcctttggaactacacttgtt 6528906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 6257385 - 6257287
Alignment:
Q  63 ataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtccagagctggaatcgttt 161  Q
    |||| ||| |||||||| || |||||||||||| ||||||||||||| ||||| ||| ||| |||    |||||||||||||||  |||||||||||||    
T  6257385 ataacaggttggcactcttcttccttgccttttgcactacacttgttcaccaatcttaattctctcgtgttgtacgattgtccatggctggaatcgttt 6257287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 6898271 - 6898173
Alignment:
Q  63 ataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtccagagctggaatcgttt 161  Q
    |||| ||| |||||||| ||||||||||| ||| |||| |||||||| ||||| ||||||| ||||   ||||||||| |||||  |||||||||||||    
T  6898271 ataacaggttggcactcttcctccttgccatttgcactgcacttgttcaccaatcttcattctctggtgttgtacgatagtccatggctggaatcgttt 6898173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 8469773 - 8469715
Alignment:
Q  36 tgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgccttt 94  Q
    ||||||| ||||||| || | |||||||||| |||||||||||||||||||||||||||    
T  8469773 tgctatagttctcttcgtgatctttcaataacaggatggcactcctcctccttgccttt 8469715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 6243491 - 6243406
Alignment:
Q  72 tggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtccagagctggaatc 157  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||| ||| ||| |||    |||||||||||||||  |||||||||    
T  6243491 tggcactcttcctccttgccttttgcactacacttgttcaccaatcttaattctctcgtgttgtacgattgtccattgctggaatc 6243406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 6481799 - 6481911
Alignment:
Q  33 cgttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatt 132  Q
    ||||| |||||||||||| ||   |||||||||| ||| |||| ||||||||||||| | ||||||||| ||||||| ||||| || |||| |||  | |    
T  6481799 cgttgttataattctcttcgtacgctttcaataatagggtggcgctcctcctccttgtccttttcactatacttgttcaccaatctccattctctatact 6481898  T
Q  133 tgtacgattgtcc 145  Q
    ||||| |||||||    
T  6481899 tgtacaattgtcc 6481911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 6530427 - 6530470
Alignment:
Q  125 tctgcatttgtacgattgtccagagctggaatcgtttccaatgg 168  Q
    |||| |||||||||||||||||||||||||||| ||||||||||    
T  6530427 tctgtatttgtacgattgtccagagctggaatcctttccaatgg 6530470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 161
Target Start/End: Original strand, 6723925 - 6724023
Alignment:
Q  63 ataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtccagagctggaatcgttt 161  Q
    |||| ||| |||||||| ||||||||||||||| | ||||||||| | ||||| ||| ||| |||   ||||||||||||||||  |||||| ||||||    
T  6723925 ataacaggttggcactcttcctccttgccttttgctctacacttgctcaccaatcttaattctctcgttttgtacgattgtccactgctggagtcgttt 6724023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 6450639 - 6450740
Alignment:
Q  64 taaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtccagagctggaatcgtttcc 163  Q
    ||||||| |||| |||||||||||| || ||| ||||||||||||| || || ||||| | | || ||||||  |||||  ||||||| |||||||||||    
T  6450639 taaaaggctggcgctcctcctcctttccctttgcactacacttgttcacaaatcttcactctttgtatttgtctgattgcacagagctagaatcgtttcc 6450738  T
Q  164 aa 165  Q
    ||    
T  6450739 aa 6450740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 6593199 - 6593282
Alignment:
Q  63 ataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtcca 146  Q
    |||| ||| |||||||| ||||||||||||||| | ||||||||| | ||||| ||| ||| |||   ||||||||||||||||    
T  6593199 ataacaggttggcactcttcctccttgccttttgctctacacttgctcaccaatcttaattctctcgttttgtacgattgtcca 6593282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 5262106 - 5262040
Alignment:
Q  78 tcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtc 144  Q
    ||||| |||||||||||| ||||  ||||||| ||||| ||||||| |||  |||||||||||||||    
T  5262106 tcctcatccttgccttttgcactgaacttgttcaccaatcttcattctctagatttgtacgattgtc 5262040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 6730567 - 6730668
Alignment:
Q  64 taaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtccagagctggaatcgtttcc 163  Q
    ||||||| |||| |||||||||||| || ||| |||||||||| || || || ||||| | | || ||||||  |||||  ||||||| |||||||||||    
T  6730567 taaaaggttggcgctcctcctcctttccctttgcactacacttattcacaaatcttcactctttgtatttgtctgattgcacagagctagaatcgtttcc 6730666  T
Q  164 aa 165  Q
    ||    
T  6730667 aa 6730668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 6851133 - 6851222
Alignment:
Q  72 tggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtccagagctggaatcgttt 161  Q
    ||||| || ||||||||||||||| ||| ||| ||||| | ||| ||| ||| |||   ||||||||||||||||  |||||||||||||    
T  6851133 tggcattcttcctccttgccttttgcaccacaattgttcaacaatcttgattctcttgttttgtacgattgtccatggctggaatcgttt 6851222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 389 - 251
Alignment:
Q  30 ctacgttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgc 129  Q
    |||| |||||||||||||||| |    || |||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||     
T  389 ctacattgctataattctctttggagactatcaataaaaggatggcactcctcctccttgcctttggaactacacttgttcaccaaacttcattatctgt 290  T
Q  130 atttgtacgattgtccagagctggaatcgtttccaatgg 168  Q
    || || |||||||||||||||||||||||||||||||||    
T  289 atctggacgattgtccagagctggaatcgtttccaatgg 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2053 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 70 - 207
Alignment:
Q  31 tacgttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgca 130  Q
    |||||||||||||||||||| |    || |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||| |    
T  70 tacgttgctataattctctttggagactatcaataaaaggatggcactcatcctcgttgcctttttcactacacttgttcaccaaacttcattctctgta 169  T
Q  131 tttgtacgattgtccagagctggaatcgtttccaatgg 168  Q
    | | |||||||||||||||||||||| ||||| |||||    
T  170 tctatacgattgtccagagctggaatggtttcaaatgg 207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 9576 - 9714
Alignment:
Q  30 ctacgttgctataattctcttggttacctttcaataaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgc 129  Q
    ||||||||||||||||||||| |    || |||||| |||||||||| |||||||||||||||||   |||||||||||| ||||| ||| ||||||||     
T  9576 ctacgttgctataattctctttggagactatcaatacaaggatggcattcctcctccttgcctttggaactacacttgttcaccaatcttaattatctgt 9675  T
Q  130 atttgtacgattgtccagagctggaatcgtttccaatgg 168  Q
    || ||||||||||||||||||||||||||||||||||||    
T  9676 atctgtacgattgtccagagctggaatcgtttccaatgg 9714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 6575170 - 6575221
Alignment:
Q  64 taaaaggatggcactcctcctccttgcctttttcactacacttgttgaccaa 115  Q
    ||||||| ||||| |||||||  ||||||||||||||||||||||| |||||    
T  6575170 taaaaggttggcaatcctccttgttgcctttttcactacacttgttcaccaa 6575221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 1653 - 1738
Alignment:
Q  75 cactcctcctccttgcctttttcactacacttgttgaccaaacttcattatctgcatttgtacgattgtccagagctggaatcgtt 160  Q
    ||||| ||||||||||||||| | ||||||||||| || || | |||||||||  | || | |||||||||| | |||||||||||    
T  1653 cactcttcctccttgccttttacgctacacttgttcacaaatcatcattatctagagttttccgattgtccataactggaatcgtt 1738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1209 times since January 2019
Visitors: 6138